Query= MSMg01no496_o23.b1 MSMg01no496_o23.b1 CHROMAT_FILE:
MSMg01no496_o23.b1 PHD_FILE: MSMg01no496_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:26 2005
(349 letters)
>mm_chr1_114143522_114144268
Length = 747
Score = 648 bits (335), Expect = 0.0
Identities = 345/349 (98%), Gaps = 2/349 (0%)
Strand = Plus / Plus
Query: 1 tagagatgatattattcatatgttcagtgtttttaatccatatatcataagactatcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagagatgatattattcatatgttcagtgtttttaatccatatatcataagactatcatt 260
Query: 61 acaaacacaatgctttgaagtttaatcctcattctttaaccattttataattcctccatt 120
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 261 acaaacacaatgctttgaagtttaatcctcattccttaaccattttatgattcctccatt 320
Query: 121 tattacatataactttagaacatcaatatagtacagaagttaaaatactgtatctgtaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattacatataactttagaacatcaatatagtacagaagttaaaatactgtatctgtaat 380
Query: 181 tttgtttgatgtttgaacactactaaagaatgacaatcttctagtatgaaaaattgttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtttgatgtttgaacactactaaagaatgacaatcttctagtatgaaaaattgttaa 440
Query: 241 caatgttgcaagttggaatgcatacttaaaataacatatactgacaatatattttatcag 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 caatgttgcaagttggaatgcatacttaaaataacata--ctgacaatatattttatcag 498
Query: 301 attagtaggaaagtgtatttatttattgaatgtccaaaattcctgttgt 349
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 attagtaggaaagtgtatttatttattgaatgtccaaaattcctgttgt 547
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 747
Length adjustment: 9
Effective length of query: 340
Effective length of database: 738
Effective search space: 250920
Effective search space used: 250920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_o23.g1 MSMg01no496_o23.g1 CHROMAT_FILE:
MSMg01no496_o23.g1 PHD_FILE: MSMg01no496_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:26 2005
(569 letters)
>mm_chr1_114304381_114305348
Length = 968
Score = 1031 bits (533), Expect = 0.0
Identities = 560/569 (98%), Gaps = 1/569 (0%)
Strand = Plus / Minus
Query: 1 tctagtcatttgcttttaaaagtaggtgtatagattcagaggtactatgaatcagtaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tctagtcatttgcttttaaaagtaggtgtatagattcagaggtactatgaatcagtaatt 709
Query: 61 ttctaataggaatttctttgactcttaagagatgaagtctttaggactggcaaataagct 120
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 708 ttgtaataggaattcctttgactcttaagggatgaagtctttaggactggcaaataagct 649
Query: 121 acttaaggagaatttaaaagaaacacgacaattctgggcttgataatgaatatgtcattg 180
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 acttaaggggaacttaaaagaaacacgacaattctgggcttgataatgaatatgtcattg 589
Query: 181 aacacctttacatctgcctagagcaaatttaaaagaaaaacacttctctccacagaatta 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aacacctttgcatctgcctagagcaaatttaaaagaaaaacacttctctccacagaatta 529
Query: 241 gtaatttattctcaaggccttttacatatgcctctaaaacatttaattttttttctcact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gtaatttattctcaaggccttttacatatgcctctaaaacatttaattttttttctcact 469
Query: 301 cctagaacttagctgataacttctgtgtaattttagccatctttcatatatataatatgt 360
||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 468 cctaggacttagctgataacttctgtgtatttttagccat-tttcatatatataatatgt 410
Query: 361 cattaatccaaatgtcagaaagagaaaccaaatcaaagttcatttcaaaactgtgtgtgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cattaatccaaatgtcagaaagagaaaccaaatcaaagttcatttcaaaactgtgtgtgg 350
Query: 421 ataaaatatgtttaagtgttaaagattctcatgaatcttagcaaagctaatttgactgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ataaaatatgtttaagtgttaaagattctcatgaatcttagcaaagctaatttgactgtg 290
Query: 481 atagtgtgtgtaaggcttcatataataatctttgatataaacttaaataattacagaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 atagtgtgtgtaaggcttcatataataatctttgatataaacttaaataattacagaaag 230
Query: 541 caatgtaaatattatattaatttatgaaa 569
|||||||||||||||||||||||||||||
Sbjct: 229 caatgtaaatattatattaatttatgaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 968
Length adjustment: 10
Effective length of query: 559
Effective length of database: 958
Effective search space: 535522
Effective search space used: 535522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
