BAC Information

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BAC

Clone NameMSMg01-496P02
Chromosome1 (Build37)
Map Location 189,524,218 - 189,524,544
singlet/doubletsinglet
Overlap genenone
Upstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
Downstream geneEsrrg, 9330162B11Rik, Ush2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496P02.T7 (MSMg01no496_p02.b1)MSMg01-496P02.TJ (MSMg01no496_p02.g1)
ACCAG573629AG573630
length782741
length of high quality
(start - end)
334 (82 - 415)327 (327 - 653)
definitionCHROMAT_FILE: MSMg01no496_p02.b1 PHD_FILE: MSMg01no496_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:27 2005CHROMAT_FILE: MSMg01no496_p02.g1 PHD_FILE: MSMg01no496_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCAAAATCTATAATTTGCGGTCGCNAAANGACTCACAATCCATATCAGG
ATGCGCNGGAATCTTNGTTCAACACAAGTACCCTATTTTTTAATAGGGTT
ATTTGGTTTTCTGGAGTGAGGTTTGTGTCTAGAGAGAGACCCAAGTCTAT
GAATTCATCTTTTATGTTTCAACAAGACCTGTGTGTGTGTGTATGAGTGT
ATGTATGTGCATATGTATTTGTGAGTGTATGGATACGTGTAAGTGTGTGA
GTGAGTGTGAGTGTGTGTACATGTAAGACTGTGTGACTGTGTGTGACTGT
GTGAGTATATGTGAATGTGTGAGTATTCTTGAGTGTATGCATGTGACTGT
GCATATGTGCATGTATGTGTGAATGTGTATGTATATATATGCATGTGTGT
GTGAGGAGTATGTGGNCCCCCCCCTTCCNANNNGAATGAGTGAAAGAGGG
TATTGTGTTTTGTGTTCCACCCGCCAAAATTTCATTAATTTTTCCCCCTC
AGCTTTCATACATTTTTACCGCTCACCCTACCGAATTAAACGAATTTTTT
CTTTTTTTGATTATTCTTTTTTTTACAATCCTTCGCATTTTTCACTTTCT
ATCCTCTGTTTTCTTCTTTTGTTTACCTATTTTCCTTATTCTCCTTCCCT
CATTCTTCGCTTTTTATAACCCTTATTTTTCTTTTCTTGTTTTTTCCCTT
TTTTTTATTTCCCTCTTTTCCCCCTATTTTTTTTCCCTTTTTCTATTCCT
CCTATTTTTTCTCTTATTACTTTCTTTTTTTG
NCCCCCCGATGAAGTGGGTAGGCTGGNGGTCGCCAGTCAAAATAAGGTAG
GTGAACTATAGAATGCTATAAAAAATTCTGGATGCCCGCTGTATGTTTAA
ACACAGGTGGACTTTGAGGAGTTTCCCTTCTGCAAGACAGCATGGAAGTG
CTCTCCTTGTTTAGGAGCCGAAAGTGTCATCCACAGTATATTAAACACAC
GTCCTCTGTGTTTCATTGAAGATACTCTATTGTGTAATAATTGGTCCCCA
CTGTTATATGCACAATTTGGCTGCTCAGATGGAAAAGGAAAACCTTCTCA
ATGGGCATCTTTACTGATAGCTTTAAGCACAGAAGGTCCCTGGTGGCCAC
AAGCTTGCAGCAACCATGCAGAGAGATTAAAGGAATACCCCAATAATCTT
TTACTGATATTGGCACACCACCTCTGCAACTTATTAGCAATAGCTGAGAG
ATGGAGTCGAAATGGGGCAGCAGAGTGGGGGGACAATGAATGTCACAGCC
TTCTCCCACAAAATCTCCTATACCCTCTGCTGCCCAAGCCCTTGTACACA
ATTAGTTCTATATTTTACAGTTGCAGAGGCCATTTATTTTGTGTATGTAT
GACTGCATGTTCCTGTGTACAAGCGTGAGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGCATCCACAGAGGCTAGGCGACAACCTCCGGTGTTA
TTCCTAAAGCACCCGCCTTAAGAACGTTTTGTTCTGATCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_p02.g1 MSMg01no496_p02.g1 CHROMAT_FILE:
MSMg01no496_p02.g1 PHD_FILE: MSMg01no496_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:27 2005
         (327 letters)



>mm_chr1_189524047_189524773
          Length = 727

 Score =  594 bits (307), Expect = e-174
 Identities = 322/327 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcacagaaggtccctggtggccacaagcttgcagcaaccatgcagagagattaaaggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gcacagaaggtccctggtggccacaagcttgcagcaaccatgcagagagattaaaggaat 439

                                                                       
Query: 61  accccaataatcttttactgatattggcacaccacctctgcaacttattagcaatagctg 120
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 438 accccaataatcttttactgatattggcagagcacctctgcaacttattagcaatagctg 379

                                                                       
Query: 121 agagatggagtcgaaatggggcagcagagtggggggacaatgaatgtcacagccttctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agagatggagtcgaaatggggcagcagagtggggggacaatgaatgtcacagccttctcc 319

                                                                       
Query: 181 cacaaaatctcctataccctctgctgcccaagcccttgtacacaattagttctatatttt 240
           ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cactaaatctcctaaaccctctgctgcccaagcccttgtacacaattagttctatatttt 259

                                                                       
Query: 241 acagttgcagaggccatttattttgtgtatgtatgactgcatgttcctgtgtacaagcgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acagttgcagaggccatttattttgtgtatgtatgactgcatgttcctgtgtacaagcgt 199

                                      
Query: 301 gagtgtgtgtgtgtgtgtgtgtgtgtg 327
           | |||||||||||||||||||||||||
Sbjct: 198 gtgtgtgtgtgtgtgtgtgtgtgtgtg 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)