BAC Information

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BAC

Clone NameMSMg01-496P12
Chromosome1 (Build37)
Map Location 70,162,106 - 70,290,981
singlet/doubletdoublet
Overlap geneSpag16
Upstream geneLOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496P12.T7 (MSMg01no496_p12.b1)MSMg01-496P12.TJ (MSMg01no496_p12.g1)
ACCAG573648AG573649
length777758
length of high quality
(start - end)		574 (74 - 647)662 (76 - 737)
definitionCHROMAT_FILE: MSMg01no496_p12.b1 PHD_FILE: MSMg01no496_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:29 2005CHROMAT_FILE: MSMg01no496_p12.g1 PHD_FILE: MSMg01no496_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,162,106 - 70,162,677)(70,290,517 - 70,290,981)
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGTGTTCAAAAGATGGTTATTGTTCTTCAATAGTTGGGAC
AGGACAGTCAAATTTCACAATGTTAATCAGGATGTAGGTAATTAAATTTG
TGATTTATTTATTTCTGGAATCTTCCATATAGTCATTTTGGATCTTGAAA
TACCACAAGTGATTGACCATGGAGAAAGTAAGATCCTAGATAGAAGGACA
AAGAGAAGACTGTCACACATACTGAAACTACCTAGAATATATTAGTTTTC
ATCAAGGAGCTAGTATTTCTTTGTTCCTCAAAGAGTGAGCATCTGTTCCC
CCAGCAGTCTGTTTATCCGTCATGTGTCCCTAATTCCTTTCCCAGGATTT
CTAATGTAAAATAGAGCTTTTCTTTAGCAACTATGTCAACTGATGAAATG
TTGGATCAAGGGCACTAAAATTCTCATTCAGGACATAGAAAAGGCTAAGT
TGTTAAGGCACAGTGATAAATCAAATGGCACTGTGAACTTCCTTTGTTTC
TTCATTAAAATCCAACAAAATAAATTTGTGTAAACACTGAGCTAACAAAA
TAATAATAACAAGCCATATAGTTAATATGGATTATTATTTAAGCTGTAAG
AATGCTATATACAAGTAATTTAGTGATATTGGAAAAGTTTTATGCTATTG
TGTTAGTACNAGACATTAGAAATTAAGTCTTTATCAGGGCTGTGTACATG
GTAATTTTCTGGTACTGCTATAATGAN

NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAACAAGTTAGG
TGACCTATAGAATGCTCAAAGAGAATCCTGCTTACTGCTATAGAAAGGAA
ATGACCAGGGAAGAAGAGAGAAGAGTGTCACTCGGCCGAGAAAAAAAAAA
TGTTGAGACTGGAAAGAGAGGACTTAAGCTAGCAATGTCCCCAGAGGGAT
ATGAGAATCTTCATCTCAGTTTTGGCATTACTTTAATGTGCCCCATCAGC
TTTTAAAATGGGCCATTTTCAAAATAAGGCCTAGCTCTTCTTGGTGGTGT
TGCTTCCAACTGGATATTGTTGCTATACATGGAATCTCCTAGATCAGATT
ACCCAAGATACAATTCATAGACCAAATGAAGCTCAAGAAGAAGGAAGACC
AAACTATGGATACTCCAATCTTTCTTAGAAGGAGGAACAAAATACCCATG
GGAGGAGATACAGAAACAAAGTGTGGAGCAGAGACTGAAGGAAAGGCCAT
CTAGAAACTGCCCCATCTATGGATCCATCCCTTATACAGTCACCAATCCC
AGACACTATTGTGGATGCCAACAAGTGCTTGCTGACAGGAGCCTGATATG
GCTGTCTCCTGAGAGGCTCTGTTAGTGCCTGACAAATACAGAGGTGGATG
CTCTCAGCCAACCATTGGACTGAGCACAGGGTCCCCATTGGAGGAGCTAG
AGAAAGGACCCAAGGAGCTGAAGGGGTTTGCAGTCCCATAGGAGGAATGA
CNATATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_p12.b1 MSMg01no496_p12.b1 CHROMAT_FILE:
MSMg01no496_p12.b1 PHD_FILE: MSMg01no496_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:29 2005
         (574 letters)



>mm_chr1_70161906_70162879
          Length = 974

 Score = 1052 bits (544), Expect = 0.0
 Identities = 565/572 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggttattgttcttcaatagttgggacaggacagtcaaatttcacaatgttaatcaggat 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggttattgttcttcaatggttgggacaggacagtcaaatttcacaatgttaatcaggat 260

                                                                       
Query: 61  gtaggtaattaaatttgtgatttatttatttctggaatcttccatatagtcattttggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaggtaattaaatttgtgatttatttatttctggaatcttccatatagtcattttggat 320

                                                                       
Query: 121 cttgaaataccacaagtgattgaccatggagaaagtaagatcctagatagaaggacaaag 180
           ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 cttgaaataccacaagtgactgaccatggaaaaagtaagatcctagatagaaggacaaag 380

                                                                       
Query: 181 agaagactgtcacacatactgaaactacctagaatatattagttttcatcaaggagctag 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaagactgtcacacattctgaaactacctagaatatattagttttcatcaaggagctag 440

                                                                       
Query: 241 tatttctttgttcctcaaagagtgagcatctgttcccccagcagtctgtttatccgtcat 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tatttctttgttcctcaaagagtgagcatttgttcccccagcagtctgtttatccgtcat 500

                                                                       
Query: 301 gtgtccctaattcctttcccaggatttctaatgtaaaatagagcttttctttagcaacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtccctaattcctttcccaggatttctaatgtaaaatagagcttttctttagcaacta 560

                                                                       
Query: 361 tgtcaactgatgaaatgttggatcaagggcactaaaattctcattcaggacatagaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtcaactgatgaaatgttggatcaagggcactaaaattctcattcaggacatagaaaag 620

                                                                       
Query: 421 gctaagttgttaaggcacagtgataaatcaaatggcactgtgaacttcctttgtttcttc 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctaagttgttaaggcatagtgataaatcaaatggcactgtgaacttcctttgtttcttc 680

                                                                       
Query: 481 attaaaatccaacaaaataaatttgtgtaaacactgagctaacaaaataataataacaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attaaaatccaacaaaataaatttgtgtaaacactgagctaacaaaataataataacaag 740

                                           
Query: 541 ccatatagttaatatggattattatttaagct 572
           |||||||||||||||||||||| |||||||||
Sbjct: 741 ccatatagttaatatggattataatttaagct 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no496_p12.g1 MSMg01no496_p12.g1 CHROMAT_FILE:
MSMg01no496_p12.g1 PHD_FILE: MSMg01no496_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:29 2005
         (662 letters)



>mm_chr1_70290517_70291578
          Length = 1062

 Score =  853 bits (441), Expect = 0.0
 Identities = 459/465 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctgcttactgctatagaaaggaaatgaccagggaagaagagagaagagtgtcactcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tcctgcttactgctatagaaaggaaatgaccagggaagaagagagaagagtgtcactcgg 406

                                                                       
Query: 61  ccgagaaaaaaaaaatgttgagactggaaagagaggacttaagctagcaatgtccccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ccgagaaaaaaaaaatgttgagactggaaagagaggacttaagctagcaatgtccccaga 346

                                                                       
Query: 121 gggatatgagaatcttcatctcagttttggcattactttaatgtgccccatcagctttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gggatatgagaatcttcatctcagttttggcattactttaatgtgccccatcagctttta 286

                                                                       
Query: 181 aaatgggccattttcaaaataaggcctagctcttcttggtggtgttgcttccaactggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaatgggccattttcaaaataaggcctagctcttcttggtggtgttgcttccaactggat 226

                                                                       
Query: 241 attgttgctatacatggaatctcctagatcagattacccaagatacaattcatagaccaa 300
           |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 225 attgttgccatacatggaatctcctagatcagattacccaagatacaattcacagaccaa 166

                                                                       
Query: 301 atgaagctcaagaagaaggaagaccaaactatggatactccaatctttcttagaaggagg 360
           |||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 165 atgaagttcaagaagaaggaagaccaaagtatggatacttcaatctttcttagaaggagg 106

                                                                       
Query: 361 aacaaaatacccatgggaggagatacagaaacaaagtgtggagcagagactgaaggaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 105 aacaaaatacccatgggaggagatacagaaacaaagtgtggagcagagactgaagaaaag 46

                                                        
Query: 421 gccatctagaaactgccccatctatggatccatcccttatacagt 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  gccatctagaaactgccccatctatggatccatcccttatacagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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