BAC Information

Click to search

BAC

Clone NameMSMg01-497A18
Chromosome1 (Build37)
Map Location 47,787,760 - 47,787,903
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc39a10, EG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497A18.T7 (MSMg01no497_a18.b1)MSMg01-497A18.TJ (MSMg01no497_a18.g1)
ACCAG573708AG573709
length7571,255
length of high quality
(start - end)
147 (45 - 191)---
definitionCHROMAT_FILE: MSMg01no497_a18.b1 PHD_FILE: MSMg01no497_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:35 2005CHROMAT_FILE: MSMg01no497_a18.g1 PHD_FILE: MSMg01no497_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAATGTATACCAGTTCAATCAGGGATAGAGAACAAACTTTGTTTC
TGAAAACAAATCATCCTCCTCCAAAATATGGCTTAAAATGAGTAAAATAA
CCAAATGGATAATTTCCTAATTATCCATTATCTATCCTAATAGATTTTTA
TAAATAGGCATTAAAAAGCATTTTCTACTTTTAGGNNNNNNNATGTTGNN
NATGAANCTCTTAAACCACTCATAGATTGCACANTCTTGAGAAAGGCCCA
GCCGCCAATATTTNCTTCNNNCCTTCCCNNNNCCCTCCATATTTTTTCCT
CCGCGNNNNTTTTTTATGTGGNNNNNNNNNNNNNCNNTNNNGGGGTGTGG
CTGGTTGGGGTGTGGANNGGTGCTGGTGGGGGTGGTTAGTTTGGGACNNN
NNNNNNNNNNNNNNNNNNNNAATAATATATTTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTATTT
TTGNNNNNCTGNGNNGNNNNNNNNCTNNNNNNNNNNNNNNNNNNNNNNNN
NNNGGGGGGTACNCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNGGGGGGGGG
GGGGGTG
TTGGATGTGCGGTTGCGAGCTGGCCTGGGAGGGCTACGGGCGTATTCACT
CAATTCTGCGCGTGGGGAGGCCGCGGGGGGATTTCTCCTCCCCCGTAGCC
GNGCCTGCCGCTCCACATAATAAAGAACTGATCCGATAGTTGCCCCGCGA
CCGTATGCTCGTCGCTCTAGTTATATATGCGCGGATGCAGAGGACGGCGG
ANGATAGAGACGATCGGCGCGGGCGGTGTGTGCGGGTGAGGCGCGTGACG
GGTGGCCAGATGGTGCGAATTTATGTGCTGGGTGGGGTGAGAGTGCCCGC
TGGAGCCACGCGCGATACTACTTTAATCGTTTTGTTTCAGCGGGGCGGGT
GTGTAAGGCTGGGGCCCGATGAATTACCGTGGTAGAGCCTCATATCTCAT
ATCCGCGTCGGTCCGTTGGATCTGGGTAGAGCGAGACGCAGACGGATATC
TGACGCTTGTTCTTAGGCCCGTCAACACTACTGTCATATATAAATGACGA
TGTCATATATCGTGCCGAGCGGTCCTACTCAATTTGCCGCGCTAATAACA
GTATAATTGTATAGTGAATCATCAGATATGTCAGTTGTTGGTGTGTGTTT
TGACGCCCGTGTGAAGCTGCATGGATGTGCACGTAGTTATCGAAGGATAG
TGTTATACGCCCCCGATTGTCAATATATCTTATTCTCCGTTACTCTATGT
CTGTTGTGGGTTCGTGATATACACCTTTGTGAACGTTTGTATGTCGTTCG
TGACCTTACTGCTCCAAGAGTAGTTGTGTGTGTTATGTGACTCGCCTCCT
CATATAGACTTGTCGAGATTATGTGCACCATTGGCTAGTCAGACCACTGA
CTCAGAACGATGATTCTGTGTCTAGTCATCACGCGCGGATTGTGAGAGAT
GGTCGTATAAAGACTGGCACGTGTACTATACATGCTGGTATACGCGAGAG
GCAGAAGGACGGCTTCATAGNTATCAACGTTCACACCACCGCTGCTGTAT
TTGTGTGATCCGCCTATCACGCTCCAGTTTGATCTAGCTTGTATATATGA
TCCTAGAACTTATTAGCGGAGTTATGTATGTTGATTAAAAGATAGAGCGC
ACACCTCGCGACCAGATATATGGCACATACGTGTCTCTGATGATACTGCG
TATAGCGCGGGGATGCAGCGCAGGATAATATACGTCGCGCATGATAGAGT
GGCCAACGCGATGGTTATATTATCGGCATAGATGCGCGCTGTGTGATGCA
GCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_a18.b1 MSMg01no497_a18.b1 CHROMAT_FILE:
MSMg01no497_a18.b1 PHD_FILE: MSMg01no497_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:35 2005
         (147 letters)



>mm_chr1_47787557_47788103
          Length = 547

 Score =  271 bits (140), Expect = 2e-77
 Identities = 143/144 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctaatgtataccagttcaatcagggatagagaacaaactttgtttctgaaaac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctaatgtataccagttcaatcagggatagagaacaaactttgtttctgaaaac 263

                                                                       
Query: 64  aaatcatcctcctccaaaatatggcttaaaatgagtaaaataaccaaatggataatttcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 264 aaatcatcctcctccaaaatatggcttaaaatgagtaaaataaccaaatggataattccc 323

                                   
Query: 124 taattatccattatctatcctaat 147
           ||||||||||||||||||||||||
Sbjct: 324 taattatccattatctatcctaat 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)