Query= MSMg01no497_b09.b1 MSMg01no497_b09.b1 CHROMAT_FILE:
MSMg01no497_b09.b1 PHD_FILE: MSMg01no497_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:38 2005
(697 letters)
>mm_chr1_93552201_93553299
Length = 1099
Score = 1239 bits (641), Expect = 0.0
Identities = 681/695 (97%), Gaps = 2/695 (0%)
Strand = Plus / Plus
Query: 5 gaattcccaggtttccgtagctgtgactagggatgaggtagcccagcccacctctgtact 64
||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcccagggaaccgtggctgtgactagggatgaggtagcccagcccaccactgtact 264
Query: 65 gagggtcttgtttcttgattggttccatttcctcccactgggggctgtattgagtgctat 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 gagggtcttgtttcttgattggttccatttcctcccactgggggctgtattgagcgctat 324
Query: 125 gtgtaaacatggatgtgtctatctcatggaatatagactgggcatattttaaagatctta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgtaaacatggatgtgtctatctcatggaatatagactgggcatattttaaagatctta 384
Query: 185 ccccacagcacagttgagttacatggttggcttttcatgttgatttgactcagtgtggat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccccacagcacagttgagttacatggttggcttttcatgttgatttgactcagtgtggat 444
Query: 245 aggaagcacatgcatgagaatggtttgtgctggagacaggatgacagcaggcatggtggg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggaagcacatgcatgagaatggtttgtgctggagacaggatgacagcaggcatggtggg 504
Query: 305 tagaccttgggatgggtgaacagggagcatgggccagatgtctggagtcatgtggcagga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagaccttgggatgggtgaacagggagcatgggccagatgtctggagtcatgtggcagga 564
Query: 365 gggtcctgatgggactatgagcttgggtttaaaacataagcccgtctcttccttcctcac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggtcctgatgggactatgagcttgggtttaaaacataagcccgtctcttccttcctcac 624
Query: 425 tcagggcaaacctgcctcttgtgggatgccttctatcctgggcatgcagctctgtttgac 484
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 625 tcagggcaaacctgcctcttgtgggacgccttctatcctgggcatgcagctctgtttgac 684
Query: 485 ctgctgtagagatagatggtgggcattttggtcaatccatggagcttggacagtatgggg 544
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 685 ctgctgtagagatagatggtgggcattttggtcaatccatggagcttggacactatgggg 744
Query: 545 tttgcagaatggggttttctca--gaggggctgctgggagatgacacatttgcaaaatat 602
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 745 tttgtagaatggggttttctcaaagaggggctgctgggagatgacacatttgcaaaatac 804
Query: 603 atcttgtgaactgggcataagcttggtagaaattatttctctttcttctacccttctgtt 662
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 805 atcttgtgaactggacataagcttggtagaaattatttctctttcttctacccttctgct 864
Query: 663 tcctcccagctacagttttgacctgaaaagcatca 697
|||||||||||||||||||||||||||||||||||
Sbjct: 865 tcctcccagctacagttttgacctgaaaagcatca 899
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1099
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1089
Effective search space: 748143
Effective search space used: 748143
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_b09.g1 MSMg01no497_b09.g1 CHROMAT_FILE:
MSMg01no497_b09.g1 PHD_FILE: MSMg01no497_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:39 2005
(575 letters)
>mm_chr1_93671438_93672412
Length = 975
Score = 673 bits (348), Expect = 0.0
Identities = 370/386 (95%), Gaps = 15/386 (3%)
Strand = Plus / Minus
Query: 190 actagcaaggctgcctcagacgggtccctggggctcgctggctagctgagctggtgagtc 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 actagcaaggctgcctcagacgggtccctggggctcgctggctagctgagctggtgagtc 916
Query: 250 ccaagagagtgagggaccatgtctctaaacacaggatggacagctttggaggcatgacac 309
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 915 ccaagacagtgagggaccatgtctct-aacacaggatggacagctttggaggcatgacac 857
Query: 310 ttgaggttgtcctctggcctacataacacacacacacacacacacacacacacacacaca 369
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 856 ttgaggttgtcctctggcctacata--------------acacacacacacacacacaca 811
Query: 370 cacacacacacacacacacacatacaaacacataccagtgacaggaagcagtacctggat 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 cacacacacacacacacacacatacaaacacataccagtgacaggaagcagtacctggat 751
Query: 430 cagggagggaaggacttgaatggaggtgggtttctctgctgcaacttcggagatgcaagg 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 cagggagggaaggacttgaatggaggtgggtttctctgctgcaacttcggagatgcaagg 691
Query: 490 acacagacctcaagcctgagtctcatacctggaatgatggtcaggaatggaaatgtgctc 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 acacagacctcaagcctgagtctcatacctggaatgatggtcaggaatggaaatgtgctc 631
Query: 550 tgaagaaaagccattgcaagagtgtg 575
||||||||||||||||||||||||||
Sbjct: 630 tgaagaaaagccattgcaagagtgtg 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
