Query= MSMg01no497_g13.b1 MSMg01no497_g13.b1 CHROMAT_FILE:
MSMg01no497_g13.b1 PHD_FILE: MSMg01no497_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:05 2005
(410 letters)
>mm_chr1_82184482_82185291
Length = 810
Score = 700 bits (362), Expect = 0.0
Identities = 378/386 (97%), Gaps = 7/386 (1%)
Strand = Plus / Plus
Query: 26 agatagatagatagatagatagatagatagatagatagatagacagacagagagaggggg 85
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 221 agatagatagatagatagatagatagatagatagatagatagatagacagagagaggggg 280
Query: 86 g-----tactcaaatatccttaaagtaggctatttgataatagactcaaattggtccatt 140
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ggggggtactcaaatatccttaaagtaggctatttgataatagactcaaattggtccatt 340
Query: 141 tgtcagcctgaaagagggctacttagagttgacagtcagaaagaggatcctactgcaacc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgtcagcctgaaagagggctacttagagttgacagtcagaaagaggatcctactgcaacc 400
Query: 201 tctagtcccaggaaaacacacagaattgacacaataatgaggacaaggggctgttatcag 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tctagtcccaggaaaacacacagaattgacacaataatgaggacaaggggctgttatcag 460
Query: 261 agaggctctacaagaaaatacatggtactaagaggccaaaatccccacctaccatccttc 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 agaggctctacaagaaaatacatggtactaagaggccaaaatccccacctaccatccttc 520
Query: 321 acaccctgcttgtcttcgtcttttac-ttctggcttcaggaaaggtaactgacataggct 379
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 521 acaccctgcttgtcttcgtcttt-accttctggcttcaggaaaggtaactgacataggct 579
Query: 380 aggggtcccactcttaatcacactac 405
||||||||||||||||||||||||||
Sbjct: 580 aggggtcccactcttaatcacactac 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space: 321201
Effective search space used: 321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_g13.g1 MSMg01no497_g13.g1 CHROMAT_FILE:
MSMg01no497_g13.g1 PHD_FILE: MSMg01no497_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:05 2005
(320 letters)
>mm_chr1_82320057_82320776
Length = 720
Score = 611 bits (316), Expect = e-179
Identities = 319/320 (99%)
Strand = Plus / Minus
Query: 1 ccacatttttaaactgtttcacgagactcaattatacacatgccttttaaacagtatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ccacatttttaaactgtttcacgagactcaattatacacatgccttttaaacagtatagt 279
Query: 61 acacgaaagtggaagcagaattatcattttctattattgtgcgtgtgcataaaggtgttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 acacgaaagtggaagcagaattatcattttctattattgtgcgtgtgcataaaggtgttg 219
Query: 121 gggaggaagagcacacagcacagtattcatatagacattaaaggacaactttatgcagct 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 218 gggaggaagagcacacagcacagtattcatatagacattaaaggacgactttatgcagct 159
Query: 181 gggttttctctccacctggacatgggcccccaggactgacctcagactttcatggcgaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gggttttctctccacctggacatgggcccccaggactgacctcagactttcatggcgaac 99
Query: 241 atcattacccattgggccatctcaccagtcccataaattactttttaattaaaataaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 atcattacccattgggccatctcaccagtcccataaattactttttaattaaaataaact 39
Query: 301 gtataataaaatcgcaagcc 320
||||||||||||||||||||
Sbjct: 38 gtataataaaatcgcaagcc 19
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
