Query= MSMg01no497_h18.b1 MSMg01no497_h18.b1 CHROMAT_FILE:
MSMg01no497_h18.b1 PHD_FILE: MSMg01no497_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:12 2005
(604 letters)
>mm_chr1_15872897_15873902
Length = 1006
Score = 1102 bits (570), Expect = 0.0
Identities = 597/606 (98%), Gaps = 2/606 (0%)
Strand = Plus / Plus
Query: 1 tctctgggaatcctgggtatagatccaccgtcctggccagtacttaataaggcttgtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctgggaatcctgggtatagatccaccgtcctggccagtacttaataaggcttgtttc 260
Query: 61 aaatttgactcaaaatcgtagtggtggttttattctcacccagtgggattaacaaaatca 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatttgactcaaaattgtagtggtggttttattctcacccagtgggattaacaaaatca 320
Query: 121 cgatgaaagtgaaaaggttaccctggctagatgactgctctcctgtgtgaaatgtctaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgatgaaagtgaaaaggttaccctggctagatgactgctctcctgtgtgaaatgtctaac 380
Query: 181 ttcctctgtcattacattgagtggttgccaaaaaa-ctgaatgctggagggacattcata 239
||||||||||||||| ||||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 381 ttcctctgtcattacgttgagtggttgccaaaaaaaccgaatgctggagggagattcata 440
Query: 240 ctcatgcgtgtggctgctggagtgttgctcagtggtagagaacttaactagtatatagtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcatgcgtgtggctgctggagtgttgctcagtggtagagaacttaactagtatatagtt 500
Query: 300 cagtgcccaacaagaggggaaaggtcagtcagttggcggtatgctcatgtgtttattact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtgcccaacaagaggggaaaggtcagtcagttggcggtatgctcatgtgtttattact 560
Query: 360 gagtccatgcaaacctgaaaggaccattgccttaaaaacaatcacaaaaaccaaaa-ccc 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 gagtccatgcaaacctgaaaggaccattgccttaaaaacaatcacaaaaaccaaaaaccc 620
Query: 419 cgagggaagcaagggaaaaagaggcatttgtgcagctggctgctcatagctttaataagc 478
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgagggaagcaagggaaagagcggcatttgtgcagctggctgctcatagctttaataagc 680
Query: 479 atttcctgaactgcctatctacgttgggcagactggtccatcctactccctgaagctcgt 538
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttcctgacctgcctatctacgttgggcagactggtccatcctactccctgaagctcgt 740
Query: 539 ggaactttccctgagcaccatatgatctttcaggaagtggtaaaaagtcatcaaaagcaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaactttccctgagcaccatatgatctttcaggaagtggtaaaaagtcatcaaaagcaa 800
Query: 599 caaaga 604
||||||
Sbjct: 801 caaaga 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1006
Length adjustment: 10
Effective length of query: 594
Effective length of database: 996
Effective search space: 591624
Effective search space used: 591624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_h18.g1 MSMg01no497_h18.g1 CHROMAT_FILE:
MSMg01no497_h18.g1 PHD_FILE: MSMg01no497_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:12 2005
(367 letters)
>mm_chr1_16037321_16038087
Length = 767
Score = 665 bits (344), Expect = 0.0
Identities = 358/364 (98%), Gaps = 3/364 (0%)
Strand = Plus / Minus
Query: 1 gtgactcatctgatccctgtttaatctcatgtaccttgatcacatttgtgggtcgttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtgactcatctgatccctgtttaatctcatgtaccttgatcacatttgtgggtcgttgtg 347
Query: 61 cgaccccccctgagacctgacagtggaggctggtgatagacccttaccttctgtggtatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cgaccccccctgagacctgacagtggaggctggtgatagacccttaccttctgtggtatt 287
Query: 121 aaagccccagtcgtgtctagtcaggggaaacctgctgtcgatcaatggtgcctctgtgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aaagccccagtcgtgtctagtcaggggaaacctgctgtcgatcaatggtgcctctgtgtc 227
Query: 181 tgagggggacattctttctgcattagcctctctcactcttcagtcatgaagaacactctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tgagggggacattctttctgcattagcctctctcactcttcagtcatgaagaacactctg 167
Query: 241 atgagttgttggatatcatcccaggtgggctgatgagtaaataaaacagtctcaaagaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 atgagttgttggatatcatcccaggtgggctgatgagtaaataaaacagtctcaaagaga 107
Query: 301 ttaatcagccccttggggttatcataatgtgtgtgtgtgtgtgtgtgtgtgtgttgtggt 360
|||||||||||||||||||||||| || |||||||||||||||||||| ||||| |||
Sbjct: 106 ttaatcagccccttggggttatcagaaggtgtgtgtgtgtgtgtgtgtatgtgt---ggt 50
Query: 361 gttg 364
||||
Sbjct: 49 gttg 46
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space: 271364
Effective search space used: 271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
