BAC Information

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BAC

Clone NameMSMg01-497J15
Chromosome1 (Build37)
Map Location 54,213,060 - 54,213,510
singlet/doubletsinglet
Overlap geneHecw2
Upstream gene1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497J15.T7 (MSMg01no497_j15.b1)MSMg01-497J15.TJ (MSMg01no497_j15.g1)
ACCAG574130AG574131
length773778
length of high quality
(start - end)		374 (49 - 422)452 (79 - 530)
definitionCHROMAT_FILE: MSMg01no497_j15.b1 PHD_FILE: MSMg01no497_j15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:21 2005CHROMAT_FILE: MSMg01no497_j15.g1 PHD_FILE: MSMg01no497_j15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCC
GCGGAATTCTACCATTTCCCTCACACTCCTCAAACTATCCCATACAATAG
AAACAGAAGGAACATTTCATTCTATAAAGCCACAGTTACTCTGTAGTGGC
TATTCCTGGTTGTCAACTTGACAATATTTGGAATGAACTACAATCCGGAA
TTGGAAGGCTCACCAGTGACCCTTATCTGGAGGCTTGGAGATCCTTATCT
GGATCTTGGTATGGAGATCTTGAGCCATAGTGGCTATGGATTCCAGAAGA
TTGAATCTCCGAGTTTAAGGAACACACCTTTAATCTGGGCTACGCCTTTC
ATCTGGGATTAAAGGTGTGGTGGAACACACCTTTAATCTGGGCTCCACCT
TCTGCTGGAGACAATATAAGCACATTGGAAGAAGGGAGTCCAGCTCTTGC
TCCAGCTCGAGCTCTTGCTCCTTCGTCTGCTTGCTGCGTGAGACTGAGTA
ACTGCTAGATCCTTGGACTTCCATTTCCAACTGCGACTGAACAATTGTAA
GTAATTGGGCTGCCCCACTGTATGTCATTTATTAAATTCCTCTACTATCT
ATATACTAACCTTATAATCTGATATCTTATTTGAACCTGTATTAAAATAT
AATTTGTTTCTATTTGGGCGGTATTTTATCCCTTTTCTTATTACGCTCAC
TACCTCTTTATTCTTCGTTATTGCCCTTTTCCTCTTTCTCTTTTTTTATT
TTATTTATTCTCTTTCTCTCTCG

NNTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACTACCAAGAGAGATGCTTA
TGTGAAGAGATGGGTATGTTTTTTAGCTTGGTTACAGAAACCATTCCATA
CTGTATACATGGCCAGTATATTATGTCTGTGCAATTTTCATCTGTTGGTT
TCACTTTGGGTAAAATGGGAAAGAAAGAATAGACCTTAATTTGTTTTAAT
TCTGTACAAATAAATGGTCTGAAAGGGAGGTGAGTGATGAACATAAACAT
GGCCACTGAAGGTAACTGTCTGTTTGGGGAGGTCTAAGAGGTCTTTTCAT
AGAAATGACCTTGAAGAAAGATTGTAGCTACATCATGGTGGACACAAGTC
ATAGAGGAGGCCATTTAGGATTCTATCTCAGACCATTTGGCTAAGGCACA
GGGACCAAGGTGAAATATGATTGTGTCAAGATTGTGGTTGAAGACTCTGG
AAGATCACCAGACCATGTAGGAATATGTATATCATACTCAGATTCTGATG
TTGTGTTGTAAAAGCAACATGAAACCTTATGAATAGGATTTATACTACAT
GTTTCTAGCAAATTCTAAGGGGATTATTTCTCTTTTTTTAAAAGCATCTT
TTCTTGTATTCGTTGGAAGAAAAAAGTATCCCGATGTCCTTGTGTAGTTT
TTGTATAACTCTCATAATCTTTGTCTTCTTGTTTTTATTAATACAGAATA
TGTATTGCATCAATTATTCTATATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_j15.g1 MSMg01no497_j15.g1 CHROMAT_FILE:
MSMg01no497_j15.g1 PHD_FILE: MSMg01no497_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:21 2005
         (452 letters)



>mm_chr1_54212778_54213629
          Length = 852

 Score =  851 bits (440), Expect = 0.0
 Identities = 449/452 (99%), Gaps = 2/452 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgactaccaagagagatgcttatgtgaagagatgggtatgttttttagcttggttacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tgactaccaagagagatgcttatgtgaagagatgggtatgttttttagcttggttacaga 674

                                                                       
Query: 61  aaccattccatactgtatacatggccagtatattatgtctgtgcaattttcatctgttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aaccattccatactgtatacatggccagtatattatgtctgtgcaattttcatctgttgg 614

                                                                       
Query: 121 tttcactttgggtaaaatgggaaagaaagaatagaccttaatttgttttaattctgtaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tttcactttgggtaaaatgggaaagaaagaatagaccttaatttgttttaattctgtaca 554

                                                                       
Query: 181 aataaatggtctgaaagggaggtgagtgatgaacataaacatggccactgaaggtaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aataaatggtctgaaagggaggtgagtgatgaacataaacatggccactgaaggtaactg 494

                                                                       
Query: 241 tc-tgtttggggaggtctaagaggtcttttcatagaaatgaccttgaagaaagattgtag 299
           || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tcgt-tttggggaggtctaagaggtcttttcatagaaatgaccttgaagaaagattgtag 435

                                                                       
Query: 300 ctacatcatggtggacacaagtcatagaggaggccatttaggattctatctcagaccatt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ctacatcatggtggacacaagtcatagaggaggccatttaggattctatctcagaccatt 375

                                                                       
Query: 360 tggctaaggcacagggaccaaggtgaaatatgattgtgtcaagattgtggttgaagactc 419
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 374 tggctaaggcacagggaccaaggtgaaatatgattatgtcaagattgtggttgaagactc 315

                                           
Query: 420 tggaagatcaccagaccatgtaggaatatgta 451
           ||||||||||||||||||||||||||||||||
Sbjct: 314 tggaagatcaccagaccatgtaggaatatgta 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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