Query= MSMg01no497_p05.b1 MSMg01no497_p05.b1 CHROMAT_FILE:
MSMg01no497_p05.b1 PHD_FILE: MSMg01no497_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:48 2005
(410 letters)
>mm_chr1_75645096_75645905
Length = 810
Score = 746 bits (386), Expect = 0.0
Identities = 404/410 (98%)
Strand = Plus / Minus
Query: 1 ctctggaagaacagtcagtgctcttaaccactgagccatcttcccagtcctacattcaag 60
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 471 ctctggaagaacagtcagtgctcttaaccactgagccatcttcccagccctatattcaag 412
Query: 61 tttttaataagaccaaaaacattgaaataattgcaatcttcatgagaagaaaggatagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tttttaataagaccaaaaacattgaaataattgcaatcttcatgagaagaaaggatagtg 352
Query: 121 acagaagaaacgtattctttagactatacatatttcttttttaatactttatttttattg 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atagaagaaacgtattctttagactatacatatttcttttttaatactttatttttattg 292
Query: 181 tatgtgaattggtgttttctctgtatatatgtctgcgtgagggtgttggatatcctggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tatgtgaattggtgttttctctgtatatatgtctgcgtgagggtgttggatatcctggaa 232
Query: 241 ctggatttacaaacagttgtaagctaacatgtgggtgctaggaacatagaaaagaaagca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ttggatttacaaacagttgtaagctaacatgtgggtgctaggaacatagaaaagaaagca 172
Query: 301 tttaactaaggacttgttccagaaggttagcccacagccatcatggcagggagcactgca 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tttaactaagaacttgttccagaaggttagcccacagccatcatggcagggagcactgca 112
Query: 361 gccagacaggtgggcgtggcacatgggcaagaggcagagagacagacaga 410
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 111 gccagacaggtgggcgtggcacatgggcaagaggcagagagagagacaga 62
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space: 321201
Effective search space used: 321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_p05.g1 MSMg01no497_p05.g1 CHROMAT_FILE:
MSMg01no497_p05.g1 PHD_FILE: MSMg01no497_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:48 2005
(236 letters)
>mm_chr1_75587768_75588399
Length = 632
Score = 393 bits (203), Expect = e-114
Identities = 228/247 (92%), Gaps = 18/247 (7%)
Strand = Plus / Plus
Query: 1 ttcccctcactgattctcggacccctggcttctgcccgtggacccctcagaggtctgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ttcccctcactgattctcggacccctggcttctgcccgtggacccctcagaggtctgtga 246
Query: 61 actc--------------ctgttgtgtgctgcttcacagactgagacatgggcttcggaa 106
|||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 247 actctagcttacacactcctgttgtgtgctgcttcacagactgagagatgggcttcggaa 306
Query: 107 ttaggtggatctgagaatcacttgatgtactagttagttagtcctagaggatcacttgat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttaggtggatctgagaatcacttgatgtactagttagttagtcctagaggatcacttgat 366
Query: 167 gtactatttagttagtcttagaggatcacttgatgtactagttagtcctaggggatcact 226
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gtacta----gttagtcttagaggatcacttgatgtactagttagtcctaggggatcact 422
Query: 227 tgatgta 233
|||||||
Sbjct: 423 tgatgta 429
Score = 130 bits (67), Expect = 9e-35
Identities = 85/95 (89%), Gaps = 8/95 (8%)
Strand = Plus / Plus
Query: 123 atcacttgatgtactagttagttagtcctagaggatcacttgatgtactatttagttagt 182
|||||||||||||||||||||| |||||||||||||||||||||||| ||| ||
Sbjct: 447 atcacttgatgtactagttagt----cctagaggatcacttgatgtacta----gttggt 498
Query: 183 cttagaggatcacttgatgtactagttagtcctag 217
| |||||||||||||||||||||||||||||||||
Sbjct: 499 cctagaggatcacttgatgtactagttagtcctag 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 2
Length of query: 236
Length of database: 632
Length adjustment: 9
Effective length of query: 227
Effective length of database: 623
Effective search space: 141421
Effective search space used: 141421
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
