BAC Information

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BAC

Clone NameMSMg01-497P20
Chromosome1 (Build37)
Map Location 14,261,447 - 14,261,759
singlet/doubletsinglet
Overlap geneEya1
Upstream geneNcoa2, LOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869
Downstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497P20.T7 (MSMg01no497_p20.b1)MSMg01-497P20.TJ (MSMg01no497_p20.g1)
ACCAG574424AG574425
length757748
length of high quality
(start - end)
644 (80 - 723)313 (325 - 637)
definitionCHROMAT_FILE: MSMg01no497_p20.b1 PHD_FILE: MSMg01no497_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:51 2005CHROMAT_FILE: MSMg01no497_p20.g1 PHD_FILE: MSMg01no497_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGATGGGC
GGAATTCCTAAATCTGACCAACAGCTTCAATGAAGTAGCTGGATATAAAA
TTAACTCAAACAAATGAGTGGCCTTTCTCTACACAAAAGATAAACAGGCT
GAGAAAGAAATTAGAGAAACAACACCCTTCATAATAGTCACAAAAAATAT
ACAATACCTTGGTGTGACTCTAACTGAGGAAGTGAAAGATCTGTATGATA
AGAACTTCAAGTCTCTAAAGAAAGAAATCAAAGAAGATCTCAGAATATGG
AAAGATCTCCCATGCTCATGGATTGTCAAGATTAATATAGTCAAGATGGC
TATCCTGCCGAAAGTAATCTATAGACTCAATGAAATCCCCATCAAAATTA
CAACTCAATTCTTCACCGAGTTAGAAAGGGCAATTTACAAATTCATCTGG
AATAACAAAAAACCTAGGATAGCCAAAACTATTCTCAACAATAAAAGAAC
CTTTGGTAGAACCACCATCCCTGGCCTCAAGCTTTACTACAGAGTAATTG
TGATAAAAACTGCATGGTACTGGTACAGCAACAGAGAGGTAGATCAATGG
AATAGAATTGAGGACCCAGAAATAAACTCACATACTTCGGTCACTTGATC
TTTGCCAAAGGAGCTAAACCATGCCGTGGAAAAAAGACAGCATTTTCTAC
AAATGGTTCTGGCACAACTGGCAGAAATCATGTAGAAGAATATGAATTGA
TCCATCC
NCCGATGAAGTGNGTAGCCTGGCGGNGNCCGGTTTTCATATCGGGGTGAA
CNANAGAAGGTTACGCAAAAATCGCTTGGNAGGAATGTTTCTGTCTTCCC
TCTGTGGGAATTAAGGACAGTTGTTCATTTGCATGATTGCCTTTAATTAT
AATTAAGACCAGTGGCCTACCTCTGTGTTGCCAGGTCTCAGTCTGGAATG
AGTGGACCATCCTGGTGCTTGGGGAAGTATTTGAGGCCCAAAGTATTTTA
TTTTTCTGTAATTTTATAAAATATAAACTTGCATTTATTACATAACAATA
TAAATTCAAATGTTATCCTGCTTACATTTAGAAGAATTACACTTAAATAT
TTAAAAATTATTGGGAATAAAAGGAGCTACTGGTCACATTCACAGGTTTC
TTAATCATTCTACTGTTTCTGAGGTTGAGTTCTTTAATATTCTACTGTCT
TAATGCTTCCTTTCCAGAAAGATCTAGATCAGTGGCTCTCCACCTGTGGG
TTGCCACCCCCATGAGGGTCACATATCAGATCTTTATGTTACGGCTCATA
AAAATAGCAACATTATAGTGATGAAGTAGCTATGAAACAGATTAAGGTTG
GTGGTCACTACAACATTAGGTACTGTATTTAAGGTCACAGCATTATTATA
TCTGAGAGCCATTGACTTAGATACTTGGAAGAAAGCTCCCCCACGCTGTT
AGACCGCCCACATTGTTAGACCCTGTAGTGCTTTCTTTGACTTTAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_p20.g1 MSMg01no497_p20.g1 CHROMAT_FILE:
MSMg01no497_p20.g1 PHD_FILE: MSMg01no497_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:51 2005
         (313 letters)



>mm_chr1_14261405_14262117
          Length = 713

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttagaagaattacacttaaatatttaaaaattattgggaataaaaggagctactggt 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 355 catttagaagaattacacttaaatatttaaaaattagtgggaataaaaggagctactggc 296

                                                                       
Query: 61  cacattcacaggtttcttaatcattctactgtttctgaggttgagttctttaatattcta 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 295 cacattcacaggtttcttaatcattctactgtttttgaggttgagttctttaatattcta 236

                                                                       
Query: 121 ctgtcttaatgcttcctttccagaaagatctagatcagtggctctccacctgtgggttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ctgtcttaatgcttcctttccagaaagatctagatcagtggctctccacctgtgggttgc 176

                                                                       
Query: 181 cacccccatgagggtcacatatcagatctttatgttacggctcataaaaatagcaacatt 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 175 cacccccatgagggtcacatatcagatctttatgttatggctcataaaaatagcaacatt 116

                                                                       
Query: 241 atagtgatgaagtagctatgaaacagattaaggttggtggtcactacaacattaggtact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 atagtgatgaagtagctatgaaacagattaaggttggtggtcactacaacattaggtact 56

                        
Query: 301 gtatttaaggtca 313
           |||||||||||||
Sbjct: 55  gtatttaaggtca 43


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)