BAC Information

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BAC

Clone NameMSMg01-498A10
Chromosome1 (Build37)
Map Location 27,846,100 - 27,846,754
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677427, LOC100040952
Downstream geneEG433281, EG665903, Gm597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498A10.T7 (MSMg01no498_a10.b1)MSMg01-498A10.TJ (MSMg01no498_a10.g1)
ACCAG574451AG574452
length1,368747
length of high quality
(start - end)		---654 (60 - 713)
definitionCHROMAT_FILE: MSMg01no498_a10.b1 PHD_FILE: MSMg01no498_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:54 2005CHROMAT_FILE: MSMg01no498_a10.g1 PHD_FILE: MSMg01no498_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATACATACCGCTTTTCGCGCTGTGTTGTGCGTCGCGGTGCGTTGTGT
CTTCCACGAGTGAGCCAGAGTATGTTCGCTGCGTGTTATCTCTCCTGTAA
GCAATATGTATGCTTATCGCTAGTATACAGTTGACATTGTGGTGTAGAAG
ACACTGACCATATTTATCATTAATAAACTATAACGACCCACGTACTACTA
CTGTGTGTCGATTACATACATCGACAGCTACTAAAGCGCGTTGCGCAGCG
TAAACATATGGATCGTTGCGGAGTCTGGCGTGACTCTTTGATAGACATAT
CACGTACTGGTTGCACGAGACGTCTACGGCTTGCGAATAGTGCGCGTCCG
GGATCGACAGGTAGCGAGCGTACGTCAGAGACAGGATGATCGTGTGTTCG
TTGACGGGNCATGTGACTCCGCTGAGAGTATCGTCAGAGTCGTGTATCGT
CTGTGNATGCCGTGCGTGTTTTTCCGTTTCTCGTATATACGTGCCGCAGT
TCTTGTGTCGTCGGGTCATTGTAGCGANGNGCGTGTATCTCTGATTCTTC
TGCGGTTGAGATCNCGCACAGAGGAGCTGTCGCTACTGAGTCGTCGTTTA
NGGATAGGTATAGAATGACAGCGCAAACTATCNAGACATCAGCTTGACAG
AGGACGCGAGCTGATAGAGCACTAGATGACCGACTTACTCGTTTATAATA
GATATCTGCACTATATTCTCGTGATCTATGAGATTGAATGCGACGNAGAC
GGCGCGTGAACATCGTCTGTTATAATTGATACGCGACGCAGTACTGCGAC
GTGCGCGTGCACCGTACGCGTCTCGTATAANGTTGTAGTATCTCTACGAT
AGATACGCGCCGATATGTCGCGACGACCTCGGTAAGAACAGAGCGGNAGC
GATGTATACAGTATGTGCGTGACGCCCTGTCGCGTTAGNTGGCGCGTATG
TATAGCTCAACGTTCATCGAGCGCGCGACGGACCTGGGTGTATACTATAC
TATAGATAAATGTATTACGCATCTCCGGCGCTGCGACGCACTGATTTATA
TAAGCGNGCGCGCTATTCGCGAGCGAACAAACNCATTGATCCGAAAACAG
CGTATATTAGTCGCCGAGACGCTATATATGTCACACGTCGGCGCATGAGC
CGTATATCGCTAGATATACATGAGTCGGACATCATNGACAAGGGCGCGCT
GCTCGTGCGTGAGAGCGNCGGCGATTATCGCGTTANTCTGTTCGTTCTGC
CTACTTATACGACTCACACCTCCTATAGTAGTCCCGCTGAACGCGACGAT
AAGACNTNAGACACGCGCACCTATGCTCATGCTACTACTACATCAGCGAT
GTGTATGNCGCGTATCGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTAATAGAGACATGTGCCAAGTATTCAAACATTGATAAGCA
TTGTATTTGTGCTACCTCATGTCCCAAGTGACAAGTCTGAGTTATCTAAG
TGCTGATACTGGTAAAAAGAATAATAATGGACTCAATTTACCACTTACAT
GTTATTTCAGTGGAGTAAGGAAATTTAATTTCTGGCTTATATCTGGCTGC
ACTCACTACAATCAATATCATCCTTAGGGATATACAACACATTACACATT
TTAAATACTTGTACTCAATCATGTGTTTTGCTTTGTAAGTTGCTACATGA
AAATAATGATGCAATCCATCATAAGTAAAAGTCTTATTCAATAATCATTT
AATGTGTGAAATTGTGGTTAACATTAAAATAATAAAATAAAAAGTCAAAT
AAAAAAGTATTGATGCATATGTTTAAAATCAAATCAACTTAATTTTGAGC
AGTAAACTTTACAAGATTTAATGGCCAGTCTTAATTATATGATTGTTACA
CAGCCAAAAATTACAAGATCCAACAAATAAATATAAGCCAATATCTCTGA
TAAATGTATGCAAAAATTATCAATTAAGTACTTTAAAACTGAATTGCAGA
ACACATCAAAATGATTATCCACCACCATCAAGTATCAAGTAAGCTGTATC
CTAGAGATGAAGAGATGGATNCATATATATAAATCAATAAGTATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_a10.g1 MSMg01no498_a10.g1 CHROMAT_FILE:
MSMg01no498_a10.g1 PHD_FILE: MSMg01no498_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:54 2005
         (654 letters)



>mm_chr1_27845901_27846954
          Length = 1054

 Score = 1220 bits (631), Expect = 0.0
 Identities = 649/655 (99%), Gaps = 1/655 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatagagacatgtgccaagtattcaaacattgataagcattgtatttgtgctacctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttaatagagacatgtgccaagtattcaaacattgataagcattgtatttgtgctacctca 259

                                                                       
Query: 61  tgtcccaagtgacaagtctgagttatctaagtgctgatactggtaaaaa-gaataataat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 260 tgtcccaagtgacaagtctgagttatctaagtgctgatactggtaaaaaagaataataat 319

                                                                       
Query: 120 ggactcaatttaccacttacatgttatttcagtggagtaaggaaatttaatttctggctt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggactcaatttaccacttacatgttatttcagtggagtaaggaaatttaatttctggctt 379

                                                                       
Query: 180 atatctggctgcactcactacaatcaatatcatccttagggatatacaacacattacaca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atatctggctgcactcactacaatcaatatcatccttagggatatacaacacattacaca 439

                                                                       
Query: 240 ttttaaatacttgtactcaatcatgtgttttgctttgtaagttgctacatgaaaataatg 299
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttttaaacacttgtactcaatcatgtgttttgctttgtaagttgctacatgaaaataatg 499

                                                                       
Query: 300 atgcaatccatcataagtaaaagtcttattcaataatcatttaatgtgtgaaattgtggt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgcaatccatcataagtaaaagtcttattcaataatcatttaatgtgtgaaattgtggt 559

                                                                       
Query: 360 taacattaaaataataaaataaaaagtcaaataaaaaagtattgatgcatatgtttaaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taacattaaaataataaaataaaaagtcaaataaaaaagtattgatgcatatgtttaaaa 619

                                                                       
Query: 420 tcaaatcaacttaattttgagcagtaaactttacaagatttaatggccagtcttaattat 479
           |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 620 tcaaatcaacttaattttgagcagtaaactttacgagatttaatggctagtcttaattat 679

                                                                       
Query: 480 atgattgttacacagccaaaaattacaagatccaacaaataaatataagccaatatctct 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgattgttacacagccaaaaattacaagatccaacaaataaatataagccaatatctct 739

                                                                       
Query: 540 gataaatgtatgcaaaaattatcaattaagtactttaaaactgaattgcagaacacatca 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gataaatgtatgcaaaaattatcaattaagtactttaaaactgaattgcagaacacatca 799

                                                                  
Query: 600 aaatgattatccaccaccatcaagtatcaagtaagctgtatcctagagatgaaga 654
           |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 800 aaatgattgtccaccacaatcaagtatcaagtaagctgtatcctagagatgaaga 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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