GTTTTCTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GGCGCGGAATTCACTCATATGCCGAAGAGTTGTTTTTGTTTCCCTGAAGA
GTACTGTATCCATTCACTCAGCCCCAAATTCAGAAAGTACCAGTCTTCAT
AGAAGGTAAAAATAAAATAATAACAACAGATTACTTGGAAAATATTCTAG
AACATAACAGGTATGTACATTCATCAGGTTTGTCCAAGGAGATAAAACCC
ACATTGTATGCATAAATGAAGAAAGGCTTTTAAGCACTTGGCTCACATAA
TTGTGGGGCTACTAGTAGAACCCAAGGGGATTTCTACAGAACCGAAATGG
CAGTTGGATCCTAATAGCAACCAAGGGCACAATTCCTATTTTCTCAGGAT
CTCCATCTCTTATGGTCTTAAGCTAATTGAATGAGTCCCCACCATTGTAG
GATAACCTGTTTCATTAAAGATATCATGATTTAAATACTATCCATGTTGC
AGTTATTCTCAGGATGGTCGCTAGACCTAATTCTACCATTTATCTCATTA
GTCAGATTTCTCAGCCCAGGCTTCCTCAGCTCCCTCTCTCCAAGATCTTC
TTATTGTCCCAGGGCTTGTAACAAATAAACCCCAGTAAGTCCATTATTGA
TGGCACTCACACCCCTTCTGTTGCTTGAGTCTCATTGTTCCTGAGCTGTT
CCTGCTGCACTTCCATGTCCCACAGAGCTTCAGCTGTGGACAGATTGCCT
GG

GCTGGAGGCCGCCTGGCTGCAGATGGAGGTGAACTATAGAAGGATTCGAG
AATAGGATGCTAAAACCATCTAGCCCTGGGCTAGCTCTTACTTCCTTTCT
TCCTCTCTTATTTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCACATCAGAGAATATATAGAGAGAAGTGTGAGAGAGAGAGAG
AGAGAGAGAGAGAAAAAAAGAGAGAGGGAGAGTGAGAAAGAGAGAAAAAG
AGGAGAGAGGGGGAGAAGATAAGAGAAAAAGGTAGAAAAGAAAAAGAGAG
ATGTTATATGAAAAAAAGGAGAGAACAAGGAAGGGAGAAGAAGGTGAAAA
AAAGAGTAAAAGTAAGCATGGGGAAGAAAGAGAGAAAAAAAAAAGAAAAG
GATAAAAAGAGAAAGAGGGAGGGGAAAAGAGAGAGAGAGAAAAAAAAAAA
AAAAAAAGGGTGTGTAGAGAATGGGGAGGGAAGGGAGAAAAAGAAAAAAA
GAGAAAAAAGAGGGGAAAATAGAGAGAGAAGGGGAAAAAAAGAGAGGAAG
AGGGAGTGGAGGAAGAGAAAAAAAAAAAAAGGAAGAGAGAGGAAGAGGGG
GAGAATTTAAAAAGAAAAAAAAAGAGAGAAAGGGTAGGGAAAAATGTGAA
AAAGAAAGAAGGGGTGAAGAAGAGAATAAGAGGGAAAAGAATAGAAGAAA
AGGGAGAAAAGAAGGAAAAAAAAAGAGAAGAGGGA

Query= MSMg01no498_a12.b1 MSMg01no498_a12.b1 CHROMAT_FILE:
MSMg01no498_a12.b1 PHD_FILE: MSMg01no498_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:55 2005
         (652 letters)



>mm_chr1_5263139_5264190
          Length = 1052

 Score = 1220 bits (631), Expect = 0.0
 Identities = 643/647 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   tgtttccctgaagagtactgtatccattcactcagccccaaattcagaaagtaccagtct 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tgtttccctgaagagtactgtatccattcactcagccccaaattcagaaagtaccagtct 265

                                                                       
Query: 66  tcatagaaggtaaaaataaaataataacaacagattacttggaaaatattctagaacata 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcatagaaggtaaaaataaaataataacaacagattacttggaaaatattctagaacata 325

                                                                       
Query: 126 acaggtatgtacattcatcaggtttgtccaaggagataaaacccacattgtatgcataaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acaggtatgtacattcatcaggtttgtccaaggagataaaacccacattgtatgcataaa 385

                                                                       
Query: 186 tgaagaaaggcttttaagcacttggctcacataattgtggggctactagtagaacccaag 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgaagaaaggcttttaagcacttggctcacataattgtggggctactagtagaacccaag 445

                                                                       
Query: 246 gggatttctacagaaccgaaatggcagttggatcctaatagcaaccaagggcacaattcc 305
           ||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gggaggccaacagaaccgaaatggcagttggatcctaatagcaaccaagggcacaattcc 505

                                                                       
Query: 306 tattttctcaggatctccatctcttatggtcttaagctaattgaatgagtccccaccatt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tattttctcaggatctccatctcttatggtcttaagctaattgaatgagtccccaccatt 565

                                                                       
Query: 366 gtaggataacctgtttcattaaagatatcatgatttaaatactatccatgttgcagttat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtaggataacctgtttcattaaagatatcatgatttaaatactatccatgttgcagttat 625

                                                                       
Query: 426 tctcaggatggtcgctagacctaattctaccatttatctcattagtcagatttctcagcc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tctcaggatggtcgctagacctaattctaccatttatctcattagtcagatttctcagcc 685

                                                                       
Query: 486 caggcttcctcagctccctctctccaagatcttcttattgtcccagggcttgtaacaaat 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 caggcttcctcagctccctctctccaagatcttcttattgtcccagggcttgtaacaaat 745

                                                                       
Query: 546 aaaccccagtaagtccattattgatggcactcacaccccttctgttgcttgagtctcatt 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aaaccccagtaagtccattattgatggcactcacaccccttctgttgcttgagtctcatt 805

                                                          
Query: 606 gttcctgagctgttcctgctgcacttccatgtcccacagagcttcag 652
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gttcctgagctgttcctgctgcacttccatgtcccacagagcttcag 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)