NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTGTTCTGATCTGTACCCTAGACCTTTAGTGGAATAATTT
GGTTCTTTGGTATTTAAACTCTTCAGTTCTTTATACATTTTGGATATCAA
TCATACATGTCATGTAGAGTTTGAATAAAACTGTTTCCCATTCTCAAGAC
TTTCTCTTTTTCTGACCAATGTTGCCATTTGCCTTACAGAAGATTTTTAA
GTTCCACGTGGTTCTATTTCCCCACATGTTCTCCTATTAGGTTCATTGTT
ACAGTCTTTGATTCACTTGGACTTGAGTTCGTACAGGGACATAAATATGG
AACTATTTGAAATCTTTCTGATCAGACAATCCATTTGACAAGCTCAATTT
GTTGAATTATTTACTTACTTTTTTTTTCAGTGTATATTTCTGTTTCTTTA
TCAAAACTGGGTGCATATATGCATGTAAAGTTTTGTCTCAGTATTCAATT
CAATTCTAGCATCTATTTTTATACCAATAGCATTTTTATGGAGACAGTCT
TGAACCTGTTCTTTTTTTTTTTTTTTTTGTAGCAAGGCTACAAAATAATA
ATTTTTTTTATTAAGATAATCCTAACAATGTGTGAGGATAGGAGATTTTT
CCATCTTTTTAAATCATATTTAATTTCGTTCTTCAGAGACTTGAAGTTTT
ATGGTGGTTGGTTAAAGGTTGCTGTCTTAATCAGGGTTTCTATTCCTGCG
CAACATCATGACCAAAAGCAATT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCCTATAGGCTTACATTTTA
TTTCTACTGAACTTAAAAATGACAATCAATGAGGTGTTGCTTACCACTAA
TTTCAAGCAAAAAGAAAAAAAAAAAAAACCTTAGAAGTAGCTTGATGCAT
ATGTAATTCATACAAATCTACTGATTCAAGAAATGAAACACATATATGAT
AGCCTCAAAACATTCTGGATTGGTAATTTATCAAAAATTATATATTTATT
ACTTCCAATGGAAGATGGGAAATCAAACTATACAGAAAATATTAAGACTA
ATTTAAAACATCTCAAATCTACTAGAGCCTGATTTAATCTACTTTAAGGA
AAATATGACAACTGGGAAAACCTTAATGTTTTAGGTGTTGTGAAAGATGA
TCAGTATATTCCACAGAAACAGCTTAATTTACTGCATGTTGCCTTACATA
TGTATCAAAATCATAGTTATGTGTGTAGTAATTATAGAAATATTCATCCA
TTGCAAGTTCAAAAATTATAAAATAATTCTATGAAATTAATTAAATGAAA
TGAAAATTAGTTTATACATTTTTTTTTTGTGTGTATCAACATTAAGCTTG
TCACTAGGTCTACTTTTAAGAATACAATCTAGAGCCCTGGGATAAAACTA
AAATGATTTTTTTAACTCTATAGTTTAGGCCATTTTGAATAATGTTGCAT
GTGGCATATAAGTGGTGGACAATATGGAGTAAGCATTC

Query= MSMg01no498_a13.g1 MSMg01no498_a13.g1 CHROMAT_FILE:
MSMg01no498_a13.g1 PHD_FILE: MSMg01no498_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:55 2005
         (644 letters)



>mm_chr1_111593071_111594117
          Length = 1047

 Score = 1166 bits (603), Expect = 0.0
 Identities = 637/653 (97%), Gaps = 13/653 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattcctataggcttacattttatttctactgaacttaaaaatgacaatcaatgaggtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 cattcctataggcttacattttatttctactgaacttaaaaatgacaatcaatgaggtgt 856

                                                                       
Query: 61  tgcttaccactaatttcaagcaaaaagaaaa----aaaa-aaaaaaccttagaagtagct 115
           |||||||||||||||||||||||||||||||    |||| ||||||||||||| ||||||
Sbjct: 855 tgcttaccactaatttcaagcaaaaagaaaaaaagaaaagaaaaaaccttagatgtagct 796

                                                                       
Query: 116 tgatgcatatgtaattcatacaaatctactgattcaagaaatgaaacacatatatgatag 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tgatgcatatgtaattcatacaaatctactgattcaagaaatgaaacacatatatgatag 736

                                                                       
Query: 176 cctcaaaacattctggattggtaatttatcaaaaattatatatttattacttccaatgga 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cctcaaaacattctggattggtaatttatcaaaaattatatatttattacttccaatgga 676

                                                                       
Query: 236 agatgggaaatcaaactatacagaaaatattaagactaatttaaaacatctcaaatctac 295
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agatgggaaatcaaacaatacagaaaatattaagactaatttaaaacatctcaaatctac 616

                                                                       
Query: 296 tagagcctgatttaatctactttaaggaaaatatgacaactggga---aaaccttaatgt 352
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 615 tagagcctgatttaatctactttaaggaaaatatgacaactgggaaagaaaccttaatgt 556

                                                                       
Query: 353 tttaggtgttgtgaaagatgatcagtatattccacagaaacagcttaatttactgcatgt 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tttaggtgttgtgaaagatgatcagtatattccacagaaacagcttaatttactgcatgt 496

                                                                       
Query: 413 tgccttacatatgtatcaaaatcatagttatgtgtgtagtaattatagaaatattcatcc 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgccttacatatgtatcaaaatcatagttatgtgtgtagtaattatagaaatattcatcc 436

                                                                       
Query: 473 attgcaagttcaaaaattataaaataattctatgaaattaattaaatgaaatgaaaatta 532
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 attgcaagttcacaaattataaaataattctatgaaattaattaaatgaaatgaaaatta 376

                                                                       
Query: 533 gtttatacattttttttttgtgtgtatcaacattaagcttgtcactaggtctacttttaa 592
           ||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtttatac---tttttttt-tgtgtatcaacattaagcttgtcactaggtctacttttaa 320

                                                                
Query: 593 gaatacaatctagagccctgggataaaactaaaatga-tttttttaactctat 644
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 319 gaatacaatctagagccctgggataaaactaaaatgattttttttaactctat 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1047
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1037
Effective search space:   657458
Effective search space used:   657458
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)