TTCTATATTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTAGGATGTCTTTCATTTCTTTGGTATTTTAGCTTTG
ACCCCATAGTCATTCTGTAGAGGGTTGTTCAATTTGCATGAGTTTGTAGG
CTACTTGTTGTTTCTGTTGTTAAAATCAAGCTTTAATCTAAAGTGATCTT
ATAGAATGCAGGAGTCTGTTTCAGTTTTCTTCTATCTGGTTATCTGCTGA
GAATTGTTTTAGAACCAAGTATATGGTTTTGGAAATTTTTCTGTAAGATG
CTAACAAGAAGGTATATTCCTTTTTGTTTGAATGAAATGGTCTGTGGAAA
TCTTTTAGGTACATTTAAGTCATAATATCATTAGTTCCATTATTTCTTTG
TTTAGTTTTTCTCTAGATGACCTGTTCATTGGAGAGAGTGGGGTGTTGAA
TTTTCCCCCTATCAATGTGTGAAGGTCAATGTGTGACTTAAACTTTAGTA
ATGTTTCATTTACAAATGTAGGTACTCTTGCATTTGGAGCATAGATATTA
ATAACTGAAATGTCATCTTGGTGGATTTTTTTCATTTGATGAATATAAAG
TATCCTCTGTCTCCTTTGATTAATTTTGGTTGACAATCTATTTTGTTAGA
TATTATAATGGCTTCACAAGCTTGTTTCTTAGGTCTGTTTCCTTGGAAAA
TCTTCTCCAATCCTGTATGCTCAAGTAAT

TTTAATTTNCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGTAG
CTTCACCAAATACAGTCGAAACTTCTGCTCCGAAGTCTACTCCTTGTCTA
GCCTTACAATATACAAGCCTTGCTATATTCCAGTCTGAGCGAACAAGGGA
GGCCATTGGCCAGTGTTCTAGTTTCAACTGGCCTAACTGAAATCAAGATT
ACTGAGCGCACTGGGAGCCGTTTCTAAAGCCGGCCAGTTCTCACAGTTAC
TCTCATACTTTACACACTGTTTTCATGGTTGCTTTAGGCTGAAACTTTGC
CTTATACCAGACTCGGAAAATCCTTGTCTTAGAAGCCAGCTCTTTGACTA
TACTCTGTTTTTAGGGTGCTTCTAAAGAAAGATGTGAAGGACAAGGCTGC
CACTGGTAAAGGTATGAAAGCTAACCCCGATAGAGCAAATGGGATTATGG
GTAGATTAGAACCCTTGTGAAATCTTTGTGCCACAATATAAAATTATATT
TCTTAGTTACACATCGTTTTTTTTTCTACATAACTATTGAAGAAATTTGC
AAAATTTAAAGAACTATGCTTGCCAAATCTGAATTTTTACCTTTAGGGGA
AAATGCTCTGATACATACTAAAGTACTCTTTAAATCAAGTTTCTGTGGGT
TCTTTAATCTATACTGACCAAATCTAACGGTCTTTTTCCCATGGTGAACT
CTGGCAA

Query= MSMg01no498_a17.g1 MSMg01no498_a17.g1 CHROMAT_FILE:
MSMg01no498_a17.g1 PHD_FILE: MSMg01no498_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:56 2005
         (597 letters)



>mm_chr1_140977732_140978730
          Length = 999

 Score = 1083 bits (560), Expect = 0.0
 Identities = 589/600 (98%), Gaps = 4/600 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgtagcttcaccaaatacagtcgaaacttctgctccgaagtctactccttgtctagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttctgtagcttcaccaaatacagtcgaaacttctgctccgaagtctactccttgtctagc 740

                                                                       
Query: 61  cttacaatatacaagccttgctatattccagtctgagcgaacaagggaggccattggcca 120
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||
Sbjct: 739 cttacaatatacaagccttgctatattccagtctgagagaacaa-ggaggccattggaca 681

                                                                       
Query: 121 gtgttctagtttcaactggcctaactgaaatcaagattactgagcgcactgggagccgtt 180
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttgttctagtgtcaactggcctaactgaaatcaagattactgagcgcactgggagccgtt 621

                                                                       
Query: 181 tctaaagccggccagttctcacagttactctcatactttacacactgttttcatggttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctaaagccggccagttctcacagttactctcatactttacacactgttttcatggttgc 561

                                                                       
Query: 241 tttaggctgaaactttgccttataccagactcggaaaatccttgtcttagaagccagctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttaggctgaaactttgccttataccagactcggaaaatccttgtcttagaagccagctc 501

                                                                       
Query: 301 tttgactatactctgtttttagggtgcttctaaagaaagatgtgaaggacaaggctgcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttgactatactctgtttttagggtgcttctaaagaaagatgtgaaggacaaggctgcca 441

                                                                       
Query: 361 ctggtaaaggtatgaaagctaaccccgatagagcaaatgggattatgggtagattagaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctggtaaaggtatgaaagctaaccccgatagagcaaatgggattatgggtagattagaac 381

                                                                       
Query: 421 ccttgtgaaatctttgtgccacaatataaaattatatttcttagttacacatcg---ttt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 380 ccttgtgaaatctttgtgccacaatataaaattatatttcttagttacacatcgtttttt 321

                                                                       
Query: 478 ttttttctacataactattgaagaaatttgcaaaatttaaagaactatgcttgccaaatc 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttttttctacataactattgaagaaatttgcaaaatttaaagaactatgcttgccaaatc 261

                                                                       
Query: 538 tgaatttttacctttaggggaaaatgctctgatacatactaaagtactctttaaatcaag 597
           | ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 260 taaatttttacctttgggggaaaatgctctgatacatactaaagtactcattaaatcaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 999
Length adjustment: 10
Effective length of query: 587
Effective length of database: 989
Effective search space:   580543
Effective search space used:   580543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)