NNNNNNNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTTGTTTATCTTTGTACCCCATTTTTTAATATGG
TTGCTTGTTTTTTTTGGAGTCCAACTTATTGTTCTTTATATATATTGGTT
ATTAGCCCCCTATCTGATTTAGGATTAATAACGATATTTTCCCAATTTGT
TGGTTGCCTTTTGGCCTTATTGACAGTGTCTTTTGCCTTAAAGAAGCTTT
GCAATTTTATGAGGTCCCATTAGTCGATTTTTGATCTTACAGCACAAGCC
ATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAAGCT
CTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGA
GTTCCTTGATCCACCTGGATTTGAGCTTTGTACAAGGAGATAAGAATGGA
TTAATTCACATTCTTCTACATGCTAAACACCAGTTTAGCCAAGAACATTT
GTTGAAGATATTGTCTTCTTTCCACTAGATGGTTTTAGCTCCTTTGTCAA
TGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTG
TTCCATTGACCTGTTTGTCATTGTATGAGTACAATGCAATTTTTACCACA
ATTACTCTGTAGTACAGCTTGAGGTCAGGGATGGTGATTCTACCAGAGGT
TATTTTATTGTTGAAAATAGTTTTTGCTA

TCCTCATTCCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAAGGACTTTTAT
ATTCATTCTTTAAGTGGACTGAAGATCCACTTTTAATTGAAGCTATCTAG
AGTAGAGAATAATCTACCATTTAATCTACGACTTCTTTAATTGTGTTTGG
AATAATAAAATATTTAACTTTTACTCTTCATAGTTAGAATGTTACTCATT
TAAAATATAAAAAATAAAGGGAAATAGAAAAAAGTGACACCAAACATAAT
CACAAACAGTCACTTTAGTATTCTATTTATTTCTGGTTGAGTTGAAATTT
TTCTTTTGGAGTTTCAATTACTAACCTAAGATTTGTTTCCAGAATCAGTA
TGTTACATACATAAATATGGACATTGTTTATTTATATATTCAAAATACAT
TTAAACTTTTGTGGGAGGTTGAGACAGGGTTTCTCTGTATAGCCGTTGCT
GTCCTTGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTG
CCTGCCTCTGCCTCCCAAGTGCTTGGATTAAAGGCGTGCGCCACCACCGC
CCAGCACATTTAAACTTTTAAGAGTGAAATGTCACTGAAAATAATGTCTG
CAGTTTTTGTCATACAATCATGACATAGCTCTACTATTTTGAAACATGTT
ATATAGTATACACCCAAAGAGATGTTAATAAN

Query= MSMg01no498_b02.g1 MSMg01no498_b02.g1 CHROMAT_FILE:
MSMg01no498_b02.g1 PHD_FILE: MSMg01no498_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:58 2005
         (640 letters)



>mm_chr1_68418414_68419453
          Length = 1040

 Score = 1237 bits (640), Expect = 0.0
 Identities = 640/640 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaaggacttttatattcattctttaagtggactgaagatccacttttaattgaagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaaggacttttatattcattctttaagtggactgaagatccacttttaattgaagcta 260

                                                                       
Query: 61  tctagagtagagaataatctaccatttaatctacgacttctttaattgtgtttggaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctagagtagagaataatctaccatttaatctacgacttctttaattgtgtttggaataa 320

                                                                       
Query: 121 taaaatatttaacttttactcttcatagttagaatgttactcatttaaaatataaaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaatatttaacttttactcttcatagttagaatgttactcatttaaaatataaaaaat 380

                                                                       
Query: 181 aaagggaaatagaaaaaagtgacaccaaacataatcacaaacagtcactttagtattcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagggaaatagaaaaaagtgacaccaaacataatcacaaacagtcactttagtattcta 440

                                                                       
Query: 241 tttatttctggttgagttgaaatttttcttttggagtttcaattactaacctaagatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttatttctggttgagttgaaatttttcttttggagtttcaattactaacctaagatttg 500

                                                                       
Query: 301 tttccagaatcagtatgttacatacataaatatggacattgtttatttatatattcaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttccagaatcagtatgttacatacataaatatggacattgtttatttatatattcaaaa 560

                                                                       
Query: 361 tacatttaaacttttgtgggaggttgagacagggtttctctgtatagccgttgctgtcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacatttaaacttttgtgggaggttgagacagggtttctctgtatagccgttgctgtcct 620

                                                                       
Query: 421 tgaactcactctgtagaccaggctggccttgaactcagaaatctgcctgcctctgcctcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaactcactctgtagaccaggctggccttgaactcagaaatctgcctgcctctgcctcc 680

                                                                       
Query: 481 caagtgcttggattaaaggcgtgcgccaccaccgcccagcacatttaaacttttaagagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caagtgcttggattaaaggcgtgcgccaccaccgcccagcacatttaaacttttaagagt 740

                                                                       
Query: 541 gaaatgtcactgaaaataatgtctgcagtttttgtcatacaatcatgacatagctctact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaatgtcactgaaaataatgtctgcagtttttgtcatacaatcatgacatagctctact 800

                                                   
Query: 601 attttgaaacatgttatatagtatacacccaaagagatgt 640
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attttgaaacatgttatatagtatacacccaaagagatgt 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)