NTTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATGTTCTATGTCCTGGGATTGAACCAGGCTTGGCTTGTAGACG
GGCTCTGATGGTTGCATCTGTTCTGAACAAGTGTGAATTTTTTTCTTGTC
TTATTCCCTGAATAACAAAATAGAACAGTGAAGGTCACTTCCCTTGTATT
ATGTGTGGGAAGCTAAAGTGTATGATAAGGCGCACAGATGCTGACTGCAA
ACACTGTGATATTTAAGGGACTGGAAGAGGGCTAAGTGAATAAAGCATTT
GCTCTCCAGGCCGGAGGAGCTGAGTTCAGGTCCTCAGTAATCACACGGAA
AGCTGAACATGGTAGAAGGTACCCATAGCTACACCACTCTGTGACAGAGG
TGGGAGAACCTTGGAAACTTGTTGGCTACCCAGTCTAGCCAAATGACAAG
GTCAGATTCAGTGAGAGGCTGTGTCTCAAAGATCAAGGGCAGAATAATAA
AAAAAGAGACTTGATTTCTAGCCTATGAAACACACACACACACACACATA
CAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGACACAGAGAGAGACA
GAGAGAAAAAGAGAGACAGAGAGGTGGAGAGGGAGGAAAAAGATATTAAA
AAAAAGAGTAATAAAGTAAAAAAAAAAACTCTTTGAATCAGAAAGGTAAA
ATTGACTAACACACACAAAAACCTGGGCTAGCCCCTGGTGAGCAACATGA
GAA

NTTTTGTTCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATATATGAGCCTTT
AGGGACCATTCTCATTCAGAACCCCATATGGCTTACTTCTCTAGTTGAAC
TCAGCATGAACCTGAGAAAAAATGAGCCTGAAATGGTGGAGTAAAGTCTC
ATGCAATAGGTAACGTTATTTAGAACATCAGACAGTTTATACTCTAAGGG
TAAAAAAGAGTCACCTAAGTATACAATCACAAGAACAATTCACCTGTGGC
AAAACCAGTTTTTTTCCATAGAGGCATATGAATTAAAACAGCTGGAAAAC
CTCACTTCTATCCACTACACCTGGGAGAAGCACACAGGAACATTTCAAGA
ACAGCTCTCTGTTTTGAAGGAACTGAGATCCAAGACTCTTGTTTTCTTGG
AGTTTTCTCACAAGCCTTTTGATTTCTTGCATGACTCCATTCTTGGACAG
TCTTCCAACATCATGCAAGTTGGTAATGTGAATTTGGTCCTACACAATAG
AAGGAGAAAACCAATTCCATAAACTTCCCCTATGAACTACGTGTCACTCC
CCCAATAATGAGAAATTAAAAGAAACAAACAAGATGAATGTCCTCCGAAG
AGAGAGTAGATCCAAGGTTGATTTCCTTACATTCATGTATGAACATGAGC
TTCTACCCCACAATCATGCACAAATACGCACAAACATGTACATATGCACC
CTGA

Query= MSMg01no498_b18.g1 MSMg01no498_b18.g1 CHROMAT_FILE:
MSMg01no498_b18.g1 PHD_FILE: MSMg01no498_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:01 2005
         (561 letters)



>mm_chr1_122702911_122703871
          Length = 961

 Score = 1085 bits (561), Expect = 0.0
 Identities = 561/561 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatatatgagcctttagggaccattctcattcagaaccccatatggcttacttctctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatatatgagcctttagggaccattctcattcagaaccccatatggcttacttctctag 260

                                                                       
Query: 61  ttgaactcagcatgaacctgagaaaaaatgagcctgaaatggtggagtaaagtctcatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaactcagcatgaacctgagaaaaaatgagcctgaaatggtggagtaaagtctcatgc 320

                                                                       
Query: 121 aataggtaacgttatttagaacatcagacagtttatactctaagggtaaaaaagagtcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataggtaacgttatttagaacatcagacagtttatactctaagggtaaaaaagagtcac 380

                                                                       
Query: 181 ctaagtatacaatcacaagaacaattcacctgtggcaaaaccagtttttttccatagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaagtatacaatcacaagaacaattcacctgtggcaaaaccagtttttttccatagagg 440

                                                                       
Query: 241 catatgaattaaaacagctggaaaacctcacttctatccactacacctgggagaagcaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catatgaattaaaacagctggaaaacctcacttctatccactacacctgggagaagcaca 500

                                                                       
Query: 301 caggaacatttcaagaacagctctctgttttgaaggaactgagatccaagactcttgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggaacatttcaagaacagctctctgttttgaaggaactgagatccaagactcttgttt 560

                                                                       
Query: 361 tcttggagttttctcacaagccttttgatttcttgcatgactccattcttggacagtctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttggagttttctcacaagccttttgatttcttgcatgactccattcttggacagtctt 620

                                                                       
Query: 421 ccaacatcatgcaagttggtaatgtgaatttggtcctacacaatagaaggagaaaaccaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaacatcatgcaagttggtaatgtgaatttggtcctacacaatagaaggagaaaaccaa 680

                                                                       
Query: 481 ttccataaacttcccctatgaactacgtgtcactcccccaataatgagaaattaaaagaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttccataaacttcccctatgaactacgtgtcactcccccaataatgagaaattaaaagaa 740

                                
Query: 541 acaaacaagatgaatgtcctc 561
           |||||||||||||||||||||
Sbjct: 741 acaaacaagatgaatgtcctc 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)