Query= MSMg01no498_c10.b1 MSMg01no498_c10.b1 CHROMAT_FILE:
MSMg01no498_c10.b1 PHD_FILE: MSMg01no498_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:04 2005
(589 letters)
>mm_chr1_163639364_163640357
Length = 994
Score = 1087 bits (562), Expect = 0.0
Identities = 581/590 (98%), Gaps = 5/590 (0%)
Strand = Plus / Plus
Query: 5 gaattcctgccctgtcggctgccccatatttcaccaaaaggaagacaaggtgagctggga 64
|||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattcctgcccagttggctgccccatatttcaccaaaaggaagacaaggagagctggga 264
Query: 65 cctctataaatcagtcactttagctatcagcagccattgtacaaaaaaa-----aaaaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 cctctataaatcagtcactttagctatcagcagccattgtacaaaaaaaaaaagaaaaaa 324
Query: 120 agaggagagtatacacttcttgtctagttcacagtcagcacaggaggaaaaaccctgagg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaggagagtatacacttcttgtctagttcacagtcagcacaggaggaaaaaccctgagg 384
Query: 180 tctggtcatatttctttgattctttgcggtgtcatggatcaaaccattaccctcttaaat 239
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 tctggtcatatttctttgattctttgtggtgtcatggatcaaaccattaccctcttaaat 444
Query: 240 actagacaagcacccttccactgaatttcaacccctcatttctgcttttaatgtctacct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actagacaagcacccttccactgaatttcaacccctcatttctgcttttaatgtctacct 504
Query: 300 taccttctgagaacaggacccatcccagagaataacagactcttaagcatagattaacta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taccttctgagaacaggacccatcccagagaataacagactcttaagcatagattaacta 564
Query: 360 tccctcccttagtaggaagtatatgtgaagtgggaagaaacaagaaaatgtcccttgggt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccctcccttagtaggaagtatatgtgaagtgggaagaaacaagaaaatgtcccttgggt 624
Query: 420 gcttcccagaaaggatggaaggagagatggggcttccctttcatgtgaacgagggagaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcttcccagaaaggatggaaggagagatggggcttccctttcatgtgaacgagggagaaa 684
Query: 480 cgagatttcccatcagaatccacatgacttttccattattaatttcagaaaccagcatgc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cgagatttcccatcagaatccacatgacttttccattattaatttcagaaaccagcatgc 744
Query: 540 tttcatgcttgttactagtaagccacatgcaagcatcttcacttcatttt 589
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttcatgcttgttactagtaagccacatgcaagcatcttcacttcatttt 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 994
Length adjustment: 10
Effective length of query: 579
Effective length of database: 984
Effective search space: 569736
Effective search space used: 569736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_c10.g1 MSMg01no498_c10.g1 CHROMAT_FILE:
MSMg01no498_c10.g1 PHD_FILE: MSMg01no498_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:04 2005
(623 letters)
>mm_chr1_163767581_163768603
Length = 1023
Score = 1158 bits (599), Expect = 0.0
Identities = 617/629 (98%), Gaps = 12/629 (1%)
Strand = Plus / Minus
Query: 1 ctagtggtactttatattagctttccttttgtgtagcaaatatattaatatattagacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ctagtggtactttatattagctttccttttgtgtagcaaatatattaatatattagacca 764
Query: 61 ttttattttcttttaagaatggcaaatatcaattagtaaagagtaacaaatgatgccttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ttttattttcttttaagaatggcaaatatcaattagtaaagagtaacaaatgatgccttt 704
Query: 121 tagtttttgaagaacactaagctaactgttaacttcaaagttagccattttacttcctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tagtttttgaagaacactaagctaactgttaacttcaaagttagccattttacttcctca 644
Query: 181 ttttccaataactttttggtctagaagcatattaatcatgtaatattatgcaaaatttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttttccaataactttttggtctagaagcatattaatcatgtaatattatgcaaaatttat 584
Query: 241 aatatc---ttttttt---gaataatgttcattctttatagttgtgatcatgtgcagtca 294
|||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 aatatcaaa------taaggaataatgttcattctttatagttgtgatcatgtgcagtca 530
Query: 295 tgtctttcaaagaaaacttagatttaaaagaaaaaactcctcattagcaaatgtatttga 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tgtctttcaaagaaaacttagatttaaaagaaaaaactcctcattagcaaatgtatttga 470
Query: 355 ccttttccttctgccctgagagactacaactctttatttgttacagtaaaatattttatg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ccttttccttctgccctgagagactacaactctttatttgttacagtaaaatattttatg 410
Query: 415 gtatagtttttaaacattgaactcaatgtgggcatctttcttaaaataggaaataaaagt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gtatagtttttaaacattgaactcaatgtgggcatctttcttaaaataggaaataaaagt 350
Query: 475 atatctgagaatgccactgccacaactgaacctaaaatgactgaatcaactcgtgtttca 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atatctgagaatgccactgccacaactgaacctaaaatgactgaatcaactcgtgtttca 290
Query: 535 actcctgttccatcacctgagtaagttatgctacgacagtagatttctgttaaaacagtg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 actcctgttccatcacctgagtaagttatgctacgacagtagatttctgttaaaacagtg 230
Query: 595 gagtgtattagaaagagaaagaaaagagc 623
|||||||||||||||||||||||||||||
Sbjct: 229 gagtgtattagaaagagaaagaaaagagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
