Query= MSMg01no498_e08.b1 MSMg01no498_e08.b1 CHROMAT_FILE:
MSMg01no498_e08.b1 PHD_FILE: MSMg01no498_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:14 2005
(607 letters)
>mm_chr1_91322175_91323182
Length = 1008
Score = 1067 bits (552), Expect = 0.0
Identities = 591/604 (97%), Gaps = 1/604 (0%)
Strand = Plus / Plus
Query: 5 gaattccctttttctct-aaaggtggttagcttgccatgggccaacattccatacatctt 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctttttctatcaaaggtggttagcttgccatgggccaacattccatacatctt 264
Query: 64 cccccgacctggtaagacattcctttacacaaagcccctgctacagtcccagagcttggt 123
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 cccccgacctggtaagacattcctttacacaaagcccctgctacagttccagagcttggt 324
Query: 124 ggtctggaatggcccgcccctccacctcccctttatttccttcacactgcttttcaaacg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtctggaatggcccgcccctccacctcccctttatttccttcacactgcttttcaaacg 384
Query: 184 gtccagactatgaggttgaaccgcaaccgatgagaaacagccaggctcttccttgcctgg 243
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 385 gtccagactatgaggttgaaccgcagccgatgagaaacaaccaggctcttccttgcctgg 444
Query: 244 ccatccacgtgttctgcttgctagcctgcttcgggtcacagcacatcatttttacataaa 303
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccatccacgtgctctgcttgccagcctgcttcgggtcacagcacatcatttttacataaa 504
Query: 304 ggaagtgttttgcctgcttacttccactttgcttggcggtgggatgctggaatatgaata 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaagtgttttgcctgcttacttccactttgcttggcggtgggatgctggaatatgaata 564
Query: 364 tacaggcatgcagacggcatcaatctctgttcttaaggaagcaaggagagagaggttttg 423
||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct: 565 tacaggcatgcagacggcagcagtctctgttcttaaggaagcgaggagagagaggttttg 624
Query: 424 tatacttaacgggctgctgtcaagaaaaccagcttctgaacacgacttgagaactggcct 483
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 tatacttaacgggctgctgtcaagaaaagcagcttctgaacacgacttgagaactggcct 684
Query: 484 ccaggagataaacatggtgcacagaccctaaaacaaccacatgatgtcacccctggatga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccaggagataaacatggtgcacagaccctaaaacaaccacatgatgtcacccctggatga 744
Query: 544 ccacacctcacaccttcttgtggccgcctctttatgcgtatgggcaggaaccgtgactca 603
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 745 ccacacctcacaccttcatgtggccgcctctttatgcgtatgggcaggaactgtgactca 804
Query: 604 cttc 607
||||
Sbjct: 805 cttc 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1008
Length adjustment: 10
Effective length of query: 597
Effective length of database: 998
Effective search space: 595806
Effective search space used: 595806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_e08.g1 MSMg01no498_e08.g1 CHROMAT_FILE:
MSMg01no498_e08.g1 PHD_FILE: MSMg01no498_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:14 2005
(591 letters)
>mm_chr1_91364436_91365426
Length = 991
Score = 1104 bits (571), Expect = 0.0
Identities = 586/591 (99%)
Strand = Plus / Minus
Query: 1 catggattaaagccgctatgtgaccaaatatacacgcctgtgttgacagagatgcatcaa 60
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 791 catggattaaagccgctatgtgaccaaatatacacacctgtgttgacagatatgcatcaa 732
Query: 61 gcaggcaccatgtggcatacactaaatgcatttcacaaaagtctgcttggtaggagactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gcaggcaccatgtggcatacactaaatgcatttcacaaaagtctgcttggtaggagactt 672
Query: 121 cagtgacccctacaacccaggtggcctggacagtctcagtcagctaagcacttctggacc 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cagcgacccctacaacccaggtggcctggacagtctcagtcagctaagcacttctggacc 612
Query: 181 cacacagctcatggaggtaggccacagtagccacaagagactgatacctcaatcacttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cacacagctcatggaggtaggccacagtagccacaagagactgatacctcaatcacttgt 552
Query: 241 ctagtaatctacaaccagcaagaggctacaatactgtccctgcctctccagacctccaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctagtaatctacaaccagcaagaggctacaatactgtccctgcctctccagacctccaag 492
Query: 301 gccatccctgcagacagagacacatctacaaatcatgtgaccttcctctccccatgttgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gccatccctgcagacagagacacatctacaaatcatgtgaccttcctctccccatgttgc 432
Query: 361 cagaatcaaacctctgcttcctcctgtccttcttcaccccactgctcacaaacactatta 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 431 cagaatcaaacctctgcttcctcctgtccttcttcaccccaatgctcacaaacactatta 372
Query: 421 ggccgccctcctactatagcgtttagagttgactgtttcccacccaccccaaacccctgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggccgccctcctactatagcgtttagagttgactgtttcccacccaccccaaacccctgc 312
Query: 481 ctgctcccccacctcccttaccaagccctcagaccaaccactcatcacccccgccactgc 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctgcttccccacctcccttaccaagccctcagaccaaccactcatcacccccgccactgc 252
Query: 541 ctaccacctgagcagggccccacagccccaccagctctgccctgcacagtg 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctaccacctgagcagggccccacagccccaccagctctgccctgcacagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
