BAC Information

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BAC

Clone NameMSMg01-498F08
Chromosome1 (Build37)
Map Location 81,668,215 - 81,668,485
singlet/doubletsinglet
Overlap geneEG621020
Upstream geneDock10, LOC665092, 9430031J16Rik
Downstream geneLOC433328, EG665145, Irs1, Rhbdd1, Col4a4, Col4a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498F08.T7 (MSMg01no498_f08.b1)MSMg01-498F08.TJ (MSMg01no498_f08.g1)
ACCAG574685AG574686
length747757
length of high quality
(start - end)
274 (56 - 329)575 (85 - 659)
definitionCHROMAT_FILE: MSMg01no498_f08.b1 PHD_FILE: MSMg01no498_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:18 2005CHROMAT_FILE: MSMg01no498_f08.g1 PHD_FILE: MSMg01no498_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCACTCTGTACACCAGGCTGGCCTCGAACTCAGAAAT
CCACCTACCTCTACCTCCCAAGTGTTGGGATTACCGGCATGCACCACCAT
TGCCCGACCAGGGTAGCTCTTTAGATAATAAACCACTTTTTGTGGCAACA
ATGGGATAAGCATCTGGGCTGAAGGCTACCTTTCACAACACCATTTTGAA
TCCCATTCAGACTTCTCTTAGGTGAGTGGTATGGAGGTTTTGGTTTAAAA
CACAGTTGCTCAAAATTAGGGATTACACCATTATGTGTCGAGCACCTGCT
GTATGCTTGGTTCTGTTTTAGTCATAACCGAATCAGTGAGACAACAGTGA
ATCATTCAGACAGTTTGTGCTGTTAAGAGCTTGCATTCTGGCAAAGGNCA
ATTTTCCTTTCCACTAGAGGCCACTTGTAGTAGATCAATAGCAAGATAAG
TGCTTAAACACACAAGGTAGAAAATAAAATAAATGATAGCTTTGGCTTCC
TTTACTGTGAGTGAGTCTAGAATACTACTTCTGTTCTGGCAGTAGCTCCA
ATTAAGCTAGCGTAAGAATTTTATATCGATTAAGGTATTATCTATGGTCG
CAGCCCGGGTATGGAATATTTTTAATTGTGCCTGATGTCTATTACGCTTT
CCAAAACGTGCATATTTATTGGTCTTCCAACTGGAACATAGTTGTGT
NNNNNNNACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGAACAGGC
TGTCCCCAAACTCGGAGATCTGTCTGCCTCTGCCTCCCAAGAGCTAGGAT
TAAAAGTGTGCACCCTCTCCCCCACCACCAAGCTCCATCTTATGGTTTTT
AGACCTCATTTTTGTTTATGTGTATATGTGTACATGCCTGAATGTATGTA
TGTGAACCATGTGCATACAGTAAGTACTCCCGAACGTCTGGAGTTGACAC
CAGATTCCTTGGTACTAGAGATGTAGGTTGTTGTAAGCCACTTGATTTGG
ATTCTGAGAACCATTCTGTAGTCCTCTGTAAGAGTAAGAAGTGCTTTTAA
ATGCTGAACTCCCTCTCCAGCCTGTCCACTTTGCTTTCACTTTCTTTTAG
GTTGTTGTTGTTTTGTTCTTTTCTTTCCTTTTCTTTTCTTTTCTTTTCTT
TTCTCTTCTTTTTTTTAAATTGAGATTATAATAAAATGACATAATTTCTT
CTTTCCCCTTCCTCATTCCAAAAACTCCCATATAACTTACCTTGCTCTCT
TTCAAATTCATGACCTCTCTTTTTTCATACACGTATGTGCACATAAACTC
AACCTAATCAGCCTGCATAATGTTATTGGTGTGTGAATGTTTTCAGGCCT
GACTAGTATTGGATAACCAATTAGTGTGCTCTTCCCTCCGCAATTCCTAA
TTGCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_f08.b1 MSMg01no498_f08.b1 CHROMAT_FILE:
MSMg01no498_f08.b1 PHD_FILE: MSMg01no498_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:18 2005
         (274 letters)



>mm_chr1_81668012_81668685
          Length = 674

 Score =  447 bits (231), Expect = e-130
 Identities = 261/271 (96%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctgtacaccaggctggcctcgaactcagaaatccacctacctctacctcc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctgtagaccaggctggcctcgaactcagaaatccacctacctctacctcc 263

                                                                       
Query: 64  caagtgttgggattaccggcatgcaccaccattgcccgaccagggtagctctttagataa 123
           |||||| ||||||||  ||  ||  |||||||||||| ||||||||||||||||||||||
Sbjct: 264 caagtgctgggattaaaggtgtgtgccaccattgcccaaccagggtagctctttagataa 323

                                                                       
Query: 124 taaaccactttttgtggcaacaatgggataagcatctgggctgaaggctacctttcacaa 183
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 324 taaaccactttttgtggcaacaatgggataagcatccgggctgaaggctacctttcacaa 383

                                                                       
Query: 184 caccattttgaatcccattcagacttctcttaggtgagtggtatggaggttttggtttaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caccattttgaatcccattcagacttctcttaggtgagtggtatggaggttttggtttaa 443

                                          
Query: 244 aacacagttgctcaaaattagggattacacc 274
           |||||||||||||||||||||||||||||||
Sbjct: 444 aacacagttgctcaaaattagggattacacc 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)