Query= MSMg01no498_g20.b1 MSMg01no498_g20.b1 CHROMAT_FILE:
MSMg01no498_g20.b1 PHD_FILE: MSMg01no498_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:27 2005
(585 letters)
>mm_chr1_79597339_79598327
Length = 989
Score = 1038 bits (537), Expect = 0.0
Identities = 568/587 (96%), Gaps = 16/587 (2%)
Strand = Plus / Minus
Query: 3 cggaactaggacagcttctaaaatagagatgtcagtctgtattagcaaagacaggattat 62
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 cggaactaagacagcttctaaaatagagatgtcagtctgtattagcaaagacaggattat 610
Query: 63 agtgccatttgtacatcatgggatgttttattgagataaaaatttgtgtcacactgaacc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 agtgccatttgtacatcatgggatgttttattgagataaaaatttgtgtcacactgaacc 550
Query: 123 catgtacaatgttt----tttgtttgtttgtttgcttgcttacacaatcattatgtaaag 178
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 catgtacaatgttttttgtttgtttgtttgtttgcttgcttacacaatcattatgtaaag 490
Query: 179 actgtgtcctttcacataaaaatcagatataattgtatgacttttggaagattgtaacaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 actgtgtcctttcacataaaaatcagatataattgtatgacttttggaagattgtaacaa 430
Query: 239 ctggcaatattgggatttttagattgtggaactaagaggccagcagtgctgtgtcctggg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ctggcaatattgggatttttagattgtggaactaagaggccagcagtgctgtgtcctggg 370
Query: 299 ttcccagtgcctttcctgctcatgtcaccagtttgcatgtttccctagccctggacctct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttcccagtgcctttcctgctcatgtcaccagtttgcatgtttccctagccctggacctct 310
Query: 359 gtcttctgacggtgtccttggtttgattacttctcattgatcaggttatatatctttcac 418
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtcttctgacagtgtccttggtttgattacttctcattgatcaggttatatatctttcac 250
Query: 419 ctcttctgcctggtgaatgcattctacttttcttggctttctctctttacatacatacat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ctcttctgcctggtgaatgcattctacttttcttggctttctctctttacatacatacat 190
Query: 479 acatacatacatacatacatacatacatacatacgtatatacatacatatatattttatt 538
|||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct: 189 acatacgta--ta----------tacatacatacgtatatacatacatatatattttatt 142
Query: 539 tacttgtgtgtgtcctcttatggatgtcacagcacatgtgtggagat 585
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tacttgtgtgtgtcctcttatggatgtcacagcacatgtgtggagat 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 989
Length adjustment: 10
Effective length of query: 575
Effective length of database: 979
Effective search space: 562925
Effective search space used: 562925
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_g20.g1 MSMg01no498_g20.g1 CHROMAT_FILE:
MSMg01no498_g20.g1 PHD_FILE: MSMg01no498_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:27 2005
(578 letters)
>mm_chr1_79528585_79529562
Length = 978
Score = 855 bits (442), Expect = 0.0
Identities = 530/580 (91%), Gaps = 36/580 (6%)
Strand = Plus / Plus
Query: 1 ttcagcatcctcagtaagttgtacaaaaccacgcatttctgtgggctctcaagatggctt 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 235 ttcagcatcctcagtaagttgtacaaaaccacacatttctgtgggctctcaagatggctt 294
Query: 61 agcagtaatggtactgacaagcctaatgacctaagttcaatcacgaggaaccatatggtg 120
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 295 agcagta------ctgacaagcccaatgacctaagttcaatcacgaggaaccatatggtg 348
Query: 121 aaaggagaaaaacaatttctgcaggttgtcctgtagcctccacatgcatgtgcacatcag 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaaggagaaaaacaatttctgcgggttgtcctgtagcctccacatgcatgtgcacatcag 408
Query: 181 tacaaacacacacacacacacacacacacacacacagacacacacacacttgaaagtatt 240
|||||| ||||||||| ||||||||||||||||||| | |||||||||
Sbjct: 409 tacaaatacacacacaaacacacacacacacacaca--c------------gaaagtatt 454
Query: 241 taaaaatatctgctatgctaatgttacctatttctataacaggatcttgttatatgagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 taaaaatatctgctatgctaatgttacctatttctataacaggatcttgttatatgagtc 514
Query: 301 agtgtgtgtgtatgcaggtgtggattgaatgaggaggtccataggaaaagcttaagtgac 360
|||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agtgtgtg--------------gattgaatgaggaggtccataggaaaagcttaagtgac 560
Query: 361 accttaagttactataaccatcactaacatttgatattaaatatctaatctgaatccaga 420
|||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 561 accttaagttactatagtcatcattaacatttgatattaaatgtctaatctgaatccaga 620
Query: 421 gaccaccaaaagctaaaaatcccaacgttaagatacataatgtggggctggggaaatgat 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 gaccaccaaaagctaaaaatcccaatgttaagatacataatgtggggctggggaaatgat 680
Query: 481 tcagtggctaagagcactgagtgctcttccagaga--tcttaaattcaattcccaggaac 538
||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||
Sbjct: 681 tcagtggctaagagcactgtgtgctcttccagagagatcttaaattcaattcacaggaac 740
Query: 539 tatatggtggttcacaactatctgtaatggaatctgatgt 578
||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 catatggtggttcacaaccatctgtaatggaatctgatgt 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
