Query= MSMg01no498_h18.b1 MSMg01no498_h18.b1 CHROMAT_FILE:
MSMg01no498_h18.b1 PHD_FILE: MSMg01no498_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:32 2005
(629 letters)
>mm_chr1_154279843_154280871
Length = 1029
Score = 1170 bits (605), Expect = 0.0
Identities = 620/625 (99%)
Strand = Plus / Plus
Query: 5 gaattcagagctggtgctccgaggcagtaatgaagtgtgacttgtatatggcctgtcaaa 64
|||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagctggaggtccaaggcagtaatgaagtgtgacttgtatatggcctgtcaaa 264
Query: 65 gagtaactagcagaattaaatatgatgatcgcatgcaaggctggtgaggatgtagaatca 124
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 gagtaactagcagaattaaatatgatgatcatatgcaaggctggtgaggatgtagaatca 324
Query: 125 ggattcagtatctcttggactgtaaatggttattcttgtggggggtggtatatagcatac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggattcagtatctcttggactgtaaatggttattcttgtggggggtggtatatagcatac 384
Query: 185 atacacagcttttttcgatgccttaatgtccctttgcggctagtctcatagctcggtctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atacacagcttttttcgatgccttaatgtccctttgcggctagtctcatagctcggtctc 444
Query: 245 ttatcttagaaaattacaaaaggtacagttaaagttctgtgaaccaaatatgcatcacaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttatcttagaaaattacaaaaggtacagttaaagttctgtgaaccaaatatgcatcacaa 504
Query: 305 atacctctaaaaatgaagacttagaaacaagtacaacattgtggagtaagagaacgtctc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atacctctaaaaatgaagacttagaaacaagtacaacattgtggagtaagagaacgtctc 564
Query: 365 cgtgaaatatttaaccacgagctccctggaacacagggagatgcttgcacagcttgcttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cgtgaaatatttaaccacgagctccctggaacacagggagatgcttgcacagcttgcttc 624
Query: 425 catctttattagccacagactagaaagtgacactcaggagggtagaaagaagctgcttct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catctttattagccacagactagaaagtgacactcaggagggtagaaagaagctgcttct 684
Query: 485 gtatggtttctttcccatagctctctccagacagcacaggaagaccttttccttccttct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtatggtttctttcccatagctctctccagacagcacaggaagaccttttccttccttct 744
Query: 545 gtacctaagtcacctcccgagttcccaagacagcaactgcagatgaactgtgctgcaggg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtacctaagtcacctcccgagttcccaagacagcaactgcagatgaactgtgctgcaggg 804
Query: 605 ctttggctttctctgctggactggc 629
|||||||||||||||||||||||||
Sbjct: 805 ctttggctttctctgctggactggc 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_h18.g1 MSMg01no498_h18.g1 CHROMAT_FILE:
MSMg01no498_h18.g1 PHD_FILE: MSMg01no498_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:33 2005
(507 letters)
>mm_chr1_154455897_154456812
Length = 916
Score = 907 bits (469), Expect = 0.0
Identities = 501/517 (96%), Gaps = 11/517 (2%)
Strand = Plus / Minus
Query: 1 atagaacatatttcttttgaccattttaaatatggcacttacagaagttacccatggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 atagaacatatttcttttgaccattttaaatatggcacttacagaagttacccatggctg 657
Query: 61 gtattatatttaccttggacagtgtagttctccgaccttagtgtttaaaatgcaggttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gtattatatttaccttggacagtgtagttctccgaccttagtgtttaaaatgcaggttgt 597
Query: 121 gaggtcttagactaattcagtgattatgaaaatagtgtttttaaattagg-----ataga 175
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 596 gaggtcttagactaattcagtgattatgaaaatagtgtttttaaattaggatagaataga 537
Query: 176 atagaaataccagaatggcacaattgggaaactttgtttttatggtcagaatatctgcaa 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 atagaaataccagaatggcacaattgggaaactttgtttttatggtcagaatatctgcaa 477
Query: 236 gtcattgtcctggcagccaccttaatctggagcattgccaggagagctggtctgctctac 295
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gtcattgtcctggcggccaccttaatctggagcattgccaggagagctggtctgctctac 417
Query: 296 ccgagggcagctttggtaccaggaacatggtatggagctaaggcctgcgagcttgaagct 355
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 416 ccgagggcagc-ttggtaccaggaacatggtatggagctaaggcctgcgagcttaaagct 358
Query: 356 gatctggaactcttcagctaaagcagaccctaccagaaagtaaacctgcgtgtcagtctc 415
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 357 gatctggaactcttcagctaaagcagaccctaccagaacgtaaacctgcgtgtcagtctc 298
Query: 416 atctcagtctcatctcagccaagagactccagagaatggggggggggg-----gtacgac 470
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 297 atctcagtctcatctcagccaagagactccagagaatgggggggggggggggagcacgac 238
Query: 471 gacgctgcagttccaactcttgaaggcctgtctgagc 507
|||||||||||||| ||||||||||||||||||||||
Sbjct: 237 gacgctgcagttccgactcttgaaggcctgtctgagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 916
Length adjustment: 10
Effective length of query: 497
Effective length of database: 906
Effective search space: 450282
Effective search space used: 450282
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
