BAC Information

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BAC

Clone NameMSMg01-499E02
Chromosome1 (Build37)
Map Location 176,303,774 - 176,439,129
singlet/doubletdoublet
Overlap geneGA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2
Upstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274
Downstream geneGrem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499E02.T7 (MSMg01no499_e02.b1)MSMg01-499E02.TJ (MSMg01no499_e02.g1)
ACCAG575382AG575383
length757755
length of high quality
(start - end)
496 (54 - 549)333 (330 - 662)
definitionCHROMAT_FILE: MSMg01no499_e02.b1 PHD_FILE: MSMg01no499_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:36 2005CHROMAT_FILE: MSMg01no499_e02.g1 PHD_FILE: MSMg01no499_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,438,634 - 176,439,129)(176,303,774 - 176,304,105)
sequence
GGCTTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAACATTCTTACCGCGAAGCTGTTCCTCCATGCTCATAGATCT
GAGGAGCAATTACGGGTGAGTCACGGAGCTAACGAATAAAGCTAGGAAGC
AAATACCCAGGATAACAGTGTTTAGACAAACCACCATCCAACACAGTTTC
AGCAACTTTTTAGTAGAACCCGAAGGGAACTCAGTGAAGGCACCTGCTCT
ATTTCAAATGTGCATGGCTGAGAGCCAAGTGCTTGAACGCACTTAAAACC
AGGCCAATGCTCGGGTCATAAGGCAGTCATTTCGTGCATCACTGAAGCCG
CTGGGATGTGTAACTCTGATCCAAGCCACGGTCCGAAAGAATCTTTCAGA
CAAAACTAAAATGACTTAAAGAATATCCTCGGTCACATGTTCTCTTGTCA
AATTGTCTCTAATGTCTGGAACCTGATAATAACAATATGTAGGCACCCCT
GTTTCCTTGTTTACATAAATGACATAATCGTCTTTTTTTATTTGTCATGG
GAGATGTTTCTGGTATTATTTTTGCTTTTATTTTTGAATGGACAAGCTAG
CATTGAACTCAGAGAGATCTGCCCCTCCTCCCTTCCCAAGTGCTTGACTT
AAGGAGTGAGCTACCATGCCCAGACCAATAATATAATTTCCAGAGACCCC
GTTCTTCATTTATTTACACCTATTACTCTGCCAAGGAGCTTCTGGTTATG
ACACCTA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACATCCCATCATTCAGTTCCTGCATTCTTT
CTGCCTCCTCTTCTGTAATTCATCTAGAGTCTTGATAGTGGGGCATAAAT
CCAATTTAGGGCTGAGCTATTGTGCGATAACTATTTTCAAATTGATTGCT
GGGGTATTTTACCTTCCGTGCTTGCCTCCTCTCAGAGTATTGAAATCAAA
GCTTGTTGTTAAATATTTCTTTAATAATTTAGGATCTAGATGTCTTCTTC
AATAAGAAAAATGCTTCAGGTTTTGCTAGCATTTGTAAGCCATTGCACAT
GTGTAGTCTTCAAATTACTTATAGATCAGTCTCTGCATTTACTTTATGAA
TATTTAGAGCCAATTTTTTATTGAAGAGTGTCTGTGTTAGAGCTAACTAT
CTCTTTATTTATCCTTCAGCGTGTTATTTTATGTTATGATTTTCATGTTT
ATGTGTGAGTATGAATTTTCACGTATATGTATGGGCGGGCACGAGTGGAC
ATGCACATGACTGGACACACCCATGAAGGCCCAAAGCTGACATTAAGTGC
CTTCCTCAACCCTTCTCTAGTCCATTGACTGANGCAAAGTCTCTGCTGAG
GTGAGATATGGTCAGTTCCTAAGAGCCTAGTTAGACAATTGGCCCAGTGA
TGCCTTCTCTGTATCTTCAGTGCTGGGATGCAGGCTTGCCCAGCTTTTAT
TTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_e02.b1 MSMg01no499_e02.b1 CHROMAT_FILE:
MSMg01no499_e02.b1 PHD_FILE: MSMg01no499_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:36 2005
         (496 letters)



>mm_chr1_176438434_176439329
          Length = 896

 Score =  944 bits (488), Expect = 0.0
 Identities = 494/496 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctaacattcttaccgcgaagctgttcctccatgctcatagatctgaggagcaattac 60
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 attctaacattcttagtgcgaagctgttcctccatgctcatagatctgaggagcaattac 637

                                                                       
Query: 61  gggtgagtcacggagctaacgaataaagctaggaagcaaatacccaggataacagtgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gggtgagtcacggagctaacgaataaagctaggaagcaaatacccaggataacagtgttt 577

                                                                       
Query: 121 agacaaaccaccatccaacacagtttcagcaactttttagtagaacccgaagggaactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 agacaaaccaccatccaacacagtttcagcaactttttagtagaacccgaagggaactca 517

                                                                       
Query: 181 gtgaaggcacctgctctatttcaaatgtgcatggctgagagccaagtgcttgaacgcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtgaaggcacctgctctatttcaaatgtgcatggctgagagccaagtgcttgaacgcact 457

                                                                       
Query: 241 taaaaccaggccaatgctcgggtcataaggcagtcatttcgtgcatcactgaagccgctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 taaaaccaggccaatgctcgggtcataaggcagtcatttcgtgcatcactgaagccgctg 397

                                                                       
Query: 301 ggatgtgtaactctgatccaagccacggtccgaaagaatctttcagacaaaactaaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggatgtgtaactctgatccaagccacggtccgaaagaatctttcagacaaaactaaaatg 337

                                                                       
Query: 361 acttaaagaatatcctcggtcacatgttctcttgtcaaattgtctctaatgtctggaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 acttaaagaatatcctcggtcacatgttctcttgtcaaattgtctctaatgtctggaacc 277

                                                                       
Query: 421 tgataataacaatatgtaggcacccctgtttccttgtttacataaatgacataatcgtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgataataacaatatgtaggcacccctgtttccttgtttacataaatgacataatcgtct 217

                           
Query: 481 ttttttatttgtcatg 496
           ||||||||||||||||
Sbjct: 216 ttttttatttgtcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no499_e02.g1 MSMg01no499_e02.g1 CHROMAT_FILE:
MSMg01no499_e02.g1 PHD_FILE: MSMg01no499_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:36 2005
         (333 letters)



>mm_chr1_176303574_176304306
          Length = 733

 Score =  636 bits (329), Expect = 0.0
 Identities = 331/332 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttgtaagccattgcacatgtgtagtcttcaaattacttatagatcagtctctgcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttgtaagccattgcacatgtgtagtcttcaaattacttatagatcagtctctgcatt 260

                                                                       
Query: 61  tactttatgaatatttagagccaattttttattgaagagtgtctgtgttagagctaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactttatgaatatttagagccaattttttattgaagagtgtctgtgttagagctaacta 320

                                                                       
Query: 121 tctctttatttatccttcagcgtgttattttatgttatgattttcatgtttatgtgtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctttatttatccttcagcgtgttattttatgttatgattttcatgtttatgtgtgag 380

                                                                       
Query: 181 tatgaattttcacgtatatgtatgggcgggcacgagtggacatgcacatgactggacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgaattttcacgtatatgtatgggcgggcacgagtggacatgcacatgactggacaca 440

                                                                       
Query: 241 cccatgaaggcccaaagctgacattaagtgccttcctcaacccttctctagtccattgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccatgaaggcccaaagctgacattaagtgccttcctcaacccttctctagtccattgac 500

                                           
Query: 301 tgangcaaagtctctgctgaggtgagatatgg 332
           ||| ||||||||||||||||||||||||||||
Sbjct: 501 tgaggcaaagtctctgctgaggtgagatatgg 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)