BAC Information

Click to search

BAC

Clone NameMSMg01-499E08
Chromosome1 (Build37)
Map Location 93,455,759 - 93,594,883
singlet/doubletdoublet
Overlap geneAsb1
Upstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1
Downstream geneTwist2, Hdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499E08.T7 (MSMg01no499_e08.b1)MSMg01-499E08.TJ (MSMg01no499_e08.g1)
ACCAG575394AG575395
length763756
length of high quality
(start - end)
657 (46 - 702)635 (59 - 693)
definitionCHROMAT_FILE: MSMg01no499_e08.b1 PHD_FILE: MSMg01no499_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:37 2005CHROMAT_FILE: MSMg01no499_e08.g1 PHD_FILE: MSMg01no499_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,455,759 - 93,456,366)(93,594,249 - 93,594,883)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGTAGTCATTCCGTAGAAAGTGCCTTTACCTTCCGAGCCGAGCCG
AGCCTCTTATAGCCTCCCCGTGCAGCTGTGTGCACAGTTCAAGTGGGAGG
GGCTGGCTCCTGGATAGCTTCCTATGGCTGGAGAGAAGGTTCTAAAGCAG
GAGTCTGTAGCTGTTCAGTGGATCTTGGGGTTGCAGGGAGAAATCTAGTC
TTTTGCCCAGGATTAAACTATTTAGTGTTGCTTGGTTCACTTTGTGGCTC
TGGTTCCAGAACTGAAGAGAGTTCCTTCTCACAGCCTTCCTTCAGTAACA
TTGCACAGCATTCTGTGGTGTGGGGACATGAGGGACACTGCCATTTGTGC
CCCATGTGATATGTGACTTATTTTGCCAGTTGAAGGTAAAATCTGGCAAT
TTGGGATAAGCGTGGAGTGACTGAACTGAATAAAAGTTATTTCTTCATCT
TGAGTGTCTGGCTCTCTAGCTCTGTGCTCTGTCTCGTCTGCTTCCGAGGT
TGCTTCCATTCCTTACCCAGGGTGTATTACGAAAGGAAAATAGGTGTTCT
CAGCCCCTTCCATCACTTGTGTGGCAGAGGCTGCCTGTCCATCACTCTCC
ATCCGTCTCCATCTGCCATGCAGAACTCTCATGCATCCATGAAGACCTTG
GTCTCCACAGGTGTGCACCATTGTGTCTGGTCTCATAATGGTACTCTGTG
AGTTTGGAGGCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAGGACTCCAAGCTCTGGGATCTCCCGTCATGGGAAGTCTGTG
CCTCAGTTTCCCTCCCCTTCTCCCAGCCTCCTCCATTCTTTCCTTCTAGA
GCTCAATGGGTTCCGCAAGCCTGAGAAAGAAACCCAAGTCCACTCATTAG
ATATCAAGGGATCGTGCAACCTTGCAATCTCTGCACTGTTGGCCCAACAA
CTGTGACTGCACCAAGAGGAGCCCTGGCCACTGCAGGGAGGGGTGCCACC
AAGTCTGAGTTATAGAGCCTTGCAAGGTCTCCAGCTCAGATAGATCCTTT
ATGTTTCCACTGGACTCTGGGTCACCCTGATAACTTCAGAGTAACAACAT
GAGGAGCACACTACATAGAGGAACCCAAGAGCAAGCCAAGAAGACTATGA
CCATGTCCGCAGCATGGGCAGAGCTATCAGGCTGCCCTACCCTGGCTGGC
CCTGCTACCCCACTGTCTGTGTGTCTCTCTAGCAATACATTGTTGTTCCT
CGATGGTATTCAAGTCTGTGATGAGCATGGAATCCCAACCGAGAACTTAC
TCACCAGGTTTCTTTGTACTGTGAATGGCTGACACACCTCTGAGTACAGT
TATTAATTTTAGAATTGACCTAAGGAGCTGGAAAACAAGATACCCCAGAG
TCCTGTCGCAGTTGACATCCTCTGAACCCATCCCAGCTGCCACGAGGAGA
AAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_e08.b1 MSMg01no499_e08.b1 CHROMAT_FILE:
MSMg01no499_e08.b1 PHD_FILE: MSMg01no499_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:37 2005
         (657 letters)



>mm_chr1_93455510_93456566
          Length = 1057

 Score = 1176 bits (608), Expect = 0.0
 Identities = 608/608 (100%)
 Strand = Plus / Plus

                                                                       
Query: 50  gagccgagcctcttatagcctccccgtgcagctgtgtgcacagttcaagtgggaggggct 109
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gagccgagcctcttatagcctccccgtgcagctgtgtgcacagttcaagtgggaggggct 309

                                                                       
Query: 110 ggctcctggatagcttcctatggctggagagaaggttctaaagcaggagtctgtagctgt 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggctcctggatagcttcctatggctggagagaaggttctaaagcaggagtctgtagctgt 369

                                                                       
Query: 170 tcagtggatcttggggttgcagggagaaatctagtcttttgcccaggattaaactattta 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tcagtggatcttggggttgcagggagaaatctagtcttttgcccaggattaaactattta 429

                                                                       
Query: 230 gtgttgcttggttcactttgtggctctggttccagaactgaagagagttccttctcacag 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtgttgcttggttcactttgtggctctggttccagaactgaagagagttccttctcacag 489

                                                                       
Query: 290 ccttccttcagtaacattgcacagcattctgtggtgtggggacatgagggacactgccat 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ccttccttcagtaacattgcacagcattctgtggtgtggggacatgagggacactgccat 549

                                                                       
Query: 350 ttgtgccccatgtgatatgtgacttattttgccagttgaaggtaaaatctggcaatttgg 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttgtgccccatgtgatatgtgacttattttgccagttgaaggtaaaatctggcaatttgg 609

                                                                       
Query: 410 gataagcgtggagtgactgaactgaataaaagttatttcttcatcttgagtgtctggctc 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gataagcgtggagtgactgaactgaataaaagttatttcttcatcttgagtgtctggctc 669

                                                                       
Query: 470 tctagctctgtgctctgtctcgtctgcttccgaggttgcttccattccttacccagggtg 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tctagctctgtgctctgtctcgtctgcttccgaggttgcttccattccttacccagggtg 729

                                                                       
Query: 530 tattacgaaaggaaaataggtgttctcagccccttccatcacttgtgtggcagaggctgc 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tattacgaaaggaaaataggtgttctcagccccttccatcacttgtgtggcagaggctgc 789

                                                                       
Query: 590 ctgtccatcactctccatccgtctccatctgccatgcagaactctcatgcatccatgaag 649
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ctgtccatcactctccatccgtctccatctgccatgcagaactctcatgcatccatgaag 849

                   
Query: 650 accttggt 657
           ||||||||
Sbjct: 850 accttggt 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no499_e08.g1 MSMg01no499_e08.g1 CHROMAT_FILE:
MSMg01no499_e08.g1 PHD_FILE: MSMg01no499_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:37 2005
         (635 letters)



>mm_chr1_93594049_93595083
          Length = 1035

 Score = 1205 bits (623), Expect = 0.0
 Identities = 632/635 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggactccaagctctgggatctcccgtcatgggaagtctgtgcctcagtttccctcccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 aggactccaagctctgggatctcccgtcatgggaagtctgtgcctcagtttccctcccct 776

                                                                       
Query: 61  tctcccagcctcctccattctttccttctagagctcaatgggttccgcaagcctgagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tctcccagcctcctccattctttccttctagagctcaatgggttccgcaagcctgagaaa 716

                                                                       
Query: 121 gaaacccaagtccactcattagatatcaagggatcgtgcaaccttgcaatctctgcactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gaaacccaagtccactcattagatatcaagggatcgtgcaaccttgcaatctctgcactg 656

                                                                       
Query: 181 ttggcccaacaactgtgactgcaccaagaggagccctggccactgcagggaggggtgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ttggcccaacaactgtgactgcaccaagaggagccctggccactgcagggaggggtgcca 596

                                                                       
Query: 241 ccaagtctgagttatagagccttgcaaggtctccagctcagatagatcctttatgtttcc 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 595 ccaagtctgagttacagagccttgcaaggtctccagctcagatagatcctttatgcttcc 536

                                                                       
Query: 301 actggactctgggtcaccctgataacttcagagtaacaacatgaggagcacactacatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 actggactctgggtcaccctgataacttcagagtaacaacatgaggagcacactacatag 476

                                                                       
Query: 361 aggaacccaagagcaagccaagaagactatgaccatgtccgcagcatgggcagagctatc 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 475 aggaacccaagagcaagccaagaagactatgaccatgtctgcagcatgggcagagctatc 416

                                                                       
Query: 421 aggctgccctaccctggctggccctgctaccccactgtctgtgtgtctctctagcaatac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aggctgccctaccctggctggccctgctaccccactgtctgtgtgtctctctagcaatac 356

                                                                       
Query: 481 attgttgttcctcgatggtattcaagtctgtgatgagcatggaatcccaaccgagaactt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 attgttgttcctcgatggtattcaagtctgtgatgagcatggaatcccaaccgagaactt 296

                                                                       
Query: 541 actcaccaggtttctttgtactgtgaatggctgacacacctctgagtacagttattaatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 actcaccaggtttctttgtactgtgaatggctgacacacctctgagtacagttattaatt 236

                                              
Query: 601 ttagaattgacctaaggagctggaaaacaagatac 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 ttagaattgacctaaggagctggaaaacaagatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)