BAC Information

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BAC

Clone NameMSMg01-499H08
Chromosome1 (Build37)
Map Location 161,227,837 - 161,228,074
singlet/doubletsinglet
Overlap geneRfwd2
Upstream gene6430517E21Rik, Astn1, Pappa2, 4930562F17Rik, EG240853, LOC664972
Downstream geneEG620484, Tnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499H08.T7 (MSMg01no499_h08.b1)MSMg01-499H08.TJ (MSMg01no499_h08.g1)
ACCAG575535AG575536
length654773
length of high quality
(start - end)
238 (54 - 291)133 (60 - 192)
definitionCHROMAT_FILE: MSMg01no499_h08.b1 PHD_FILE: MSMg01no499_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:50 2005CHROMAT_FILE: MSMg01no499_h08.g1 PHD_FILE: MSMg01no499_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAAAGTCCGTAGGGGGCGGAANNNCCNGGNGATACAATTTATGGAGGT
GNNATAAATATCTAATCTTATCATTCTATTATGATCTGATTATACCGTCT
CTGGTCTTTATTTTCTGTAATTTAAACGTTTATCTAGATTCTAAACATTT
TCTATTTTACTTGGGTAAAATAAGATGTGTTCTAGTTTACCAATTATGCT
ATTTAGGTCTCATGTGGTTTTAATTTTGTTAAACATTGGCACAGACTAGT
AACTGATCTGATTCAGTGTCTCAAACAGTTAAATATTTGTTCCCTCCCTT
CAGNTTTCATGAAAAAAAAAATACAAGTAAAACTTTATTCTATTAGTTAC
TTTCCTATTGCTATGATCAAAAACAAAAAACAAAAAACAAAACAAAAAAA
ATCCAAAACCATGCTCAAGGCATCTTAGAGAAGGAAGGGTGTATTCACCA
CACAGATGCAGAGGAACGAGAGTGTGGACATGGTGGGAAAGCACAGCAGC
AAACAAGCATGGTGCTGCAGGCAGAAGTAGACGCTCATTTACTCTGAGTT
TAGTTTGGGAAGCAGAAGAGAATGAACTGGGAATGGCACAAAGTTTTGAA
GCCTCTAAGCCTGCCTGCAGTGGCATCTTTTCTTTAGTAGGCTATACTTC
CTCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTG
ACATTCTTAAACAAAAGGAGACAGTCAGCTGTGGACCACTACACCCTGGA
CACAGTTAAAAGGAGTCAACACTCAGTGTAATTATTTAAAAAGAAAAGAA
GAAAAGAGAGAGATGGGGAGGGGGGAGGGGAGGAGAGGAGAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTNNNNNNCNN
NNNNNTNTNTTTTTTTTTTTNNNTTTTTTNNNNNNNNNNNNNNNTNNNTT
TTCTTTCNTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNTTTTTTTTC
CCCCCCCTCTCCTTTTTTCTTTTTTTCCTTTCTTCTTTTTCTCTTTCTTT
GTCCCCCCCTTTCTTTTCTTTTTCTCCCTTCTCTTCTTTCCTCCCCCCTT
CCCTTTCTTCCTTTCTTTCTCTCTCCTTTCTCCCTTTTCTCCTTTCCCCC
TTTCCTCCTTCTTCTTTCCCTTTCTCTTCTTTTTCCCCTTTTTTTCTTCC
CTCTCTTTTTCCCTCCCCCCCTCCTTTCTCTTTTCCTTCTCCTTCTTTTT
CTCTTCTCTCTTCTTTTTACTTTTTCCCCTCTTTCCCTCTTTTCTCTCCC
CTCTTTTTCCCTTCTTTTCCCCCTTCTCGTTGCTTCTTTTTTTCTTCCCT
CTCCTCCCTTTATTTCTTCCTTTTTCTCCTCTTTTTTCTCCTCCCTCCCC
TTCTTTTCCGTCCCCTCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_h08.b1 MSMg01no499_h08.b1 CHROMAT_FILE:
MSMg01no499_h08.b1 PHD_FILE: MSMg01no499_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:50 2005
         (238 letters)



>mm_chr1_161227637_161228274
          Length = 638

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaatatctaatcttatcattctattatgatctgattataccgtctctggtctttattt 60
           ||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||
Sbjct: 438 ataaatatctaatcttatcattctattatgatctgagaatactgtctctggtctttattt 379

                                                                       
Query: 61  tctgtaatttaaacgtttatctagattctaaacattttctattttacttgggtaaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tctgtaatttaaacgtttatctagattctaaacattttctattttacttgggtaaaataa 319

                                                                       
Query: 121 gatgtgttctagtttaccaattatgctatttaggtctcatgtggttttaattttgttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gatgtgttctagtttaccaattatgctatttaggtctcatgtggttttaattttgttaaa 259

                                                                     
Query: 181 cattggcacagactagtaactgatctgattcagtgtctcaaacagttaaatatttgtt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cattggcacagactagtaactgatctgattcagtgtctcaaacagttaaatatttgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)