BAC Information

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BAC

Clone NameMSMg01-499N16
Chromosome1 (Build37)
Map Location 107,579,095 - 107,579,502
singlet/doubletsinglet
Overlap gene2310035C23Rik
Upstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249
Downstream geneLOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499N16.T7 (MSMg01no499_n16.b1)MSMg01-499N16.TJ (MSMg01no499_n16.g1)
ACCAG575837AG575838
length7311,585
length of high quality
(start - end)
410 (322 - 731)---
definitionCHROMAT_FILE: MSMg01no499_n16.b1 PHD_FILE: MSMg01no499_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:21 2005CHROMAT_FILE: MSMg01no499_n16.g1 PHD_FILE: MSMg01no499_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTAAACGACTCACAATAGTTTCATAATAGGCGGAANTCTGATT
TCGTTTCCAAAAACAAAGGCTTTTTTAAAGATAAGATAAATTCATGATAT
TTGAATTGCTGCTATTTAGCTTATTTTTTTGCATTTTGAACATAGAAGTG
AGAAGTAGTTTTTGTCATCAAGGAGTTTGTTCCTTGTTTGTTGCACGATC
CCTTTGGAATTGATGACAAGGGCTTTGGTCGCTTTAGAACTGTGCCTAGG
AGATAACTCAGCCCATAATGTGCTTACTTTGCAACAATAAGGACCCGAAA
GGAACTGCACGATCNTTANNCTCAGTACCCATTTAAAAAAACAAAATCAA
AAAACAGGTATGCGTAGTGTCATATACCTATAATCACAGTACTGAGGAAG
AGGAGGCCCTGGGGCTCTCTGGACAACCCACCTAGCCTACTTAGAGAGTT
CCAGGCCGATAAGACACTGTCAGGAGAACAGAATGGATCACACCCTAGAA
ACAACATGGAGATTAGCCTCTGCCCTTCACATGCAGCAAGTGTCTTTGTA
CCTTCACAAAAAGGTTTTTGTATACAGTTTTACACACAGGAAAACCTGCT
TCACAAAATCCATCTTTTAACATCAGAGTTGCTGGTTTGGTTCTTATGTT
TCTGCCTGCTAGAGTAAAACTTCTATGTTCACACACTGGTGAAATCCAGA
GACACAAAGCTGCTTGCTTGCTAATTTTCAG
ATACCAAACAGACAGTCGGCAAATGATCTGATATAGCGAGATTAAGATAC
ATTAAATACATCTAACTCTACTACTATACATATACCCTATAAATAACGCA
TCCGGAAGTAAACAACACGTACCATCTCTCTCTCTACCCAGGGAGAGCGC
CGCACCCAGGTGCGGTTACCTTTCCTCTCCACATCTCGCCGTGTTATACA
CTAAACGTGACTTACATGGAGCCGTGGAGAGAGCGAGACACACCAAACAC
ACTGCTCTCGCTCGCTCATGCCTACTNACCATCTATAATCGGTCGTTTCT
TCTATCTCTCAGATCTGACATGCAGCGTCGTCGTGTTGCTGCCTGCGTCT
CGTTATATTCGTATCCTCGCTCGCGCGGTGTTGCTTCTATCGTATGTCCT
CGTCTCTACTCTATCTATCTATATATGACTACACATCGCGTGCGCTGGCG
GTCAGTAGCATCATAGCATGCTATAGATAGAATAATAGTAGTATTCTATC
GTCACCGCTCGCGNTTATGTATGTTGTATTTGTATGTACTCGTGCGTACG
AACTACATTACACATCATATTCGATATTACCTAACTCCACGAGACAATAT
ATATGTGTCACAGACTCCCTTCCATCACGTTTAGTCCACGCACACTGTAG
ATTGTTTACTCGCTGCTTACGCACATTTCTAACTATAGAGCGCGATGTGC
TAATAANTGCGCATTGAACTTATGATTCATACTATGAGTCTAACCACTGT
TATCTACGACGCGCTATCACCGCCGCTGACGTAACGTTCTGCACTGAGCA
ATGCGCTACACGCATAGCGTCTCTGTGCCCTCGCGATATTCTGTACACTC
TCTCGTCCGCTAGCTTCGCGACCTTGCGACAATGTCTCTATGAATGTATG
TGACCCGCTGTGGCGACCGTCGACATGTCACATGACGCTAGATCTCGATG
TGATGCTGGTGATGTATAGGTATAGATCGGAGAACTCTACNACTGATCAA
CGATCGCCTAGGTCACCGGCGCAATGACCTCCATGGCGAGAGCATAATAT
GCGCAGTGTGTGGCGGAGCTCCTAATGTTATACTCATCTCACGCATCGCA
GTACTGTGTCGTGGTGAGCGATTCGACGTAGACGTGCAGCATCGCGTCGA
GCGAGACGCGAGATTATATACAATAAATCTTATCTACTCTCACTCGCATG
CTATGTATCTATATACACATATATCACCCCACACATGCGTGATTGAGTAT
AGTCGTATAGAGAGTCTCGAACGGAGTGACACTGCTGTGTGTTCACTGAC
TGCTACAACCGCGTGTACATGTCTCTACCGCGACGTTACTGATTATACGC
CGCGCGCTNGTATACGTACGTATGATAGACAGTCATNTGTGCGCACCNGC
CATAGACTGCCGCGCTCTCATAGTACTCAGACAGGACTAGTACNTCTGTC
TCGTAGCTCACNACGTGTGCATATTATATCATATCGTCTGTATTCTAGAG
ATTCTGATATGTGTGTACCACCCGCCCGCGTATCATGCTTAGNTCATACG
ACGATCTAGCGCGCTCTAGTGCGTAGAGCTCGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_n16.b1 MSMg01no499_n16.b1 CHROMAT_FILE:
MSMg01no499_n16.b1 PHD_FILE: MSMg01no499_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:21 2005
         (410 letters)



>mm_chr1_107578891_107579702
          Length = 812

 Score =  762 bits (394), Expect = 0.0
 Identities = 404/408 (99%), Gaps = 2/408 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   tacccatttaaaaaaacaaaatcaaaaaacaggtatgcgtagtgtcatatacctataatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tacccatttaaaaaaacaaaatcaaaaaacaggtatgcgtagtgtcatatacctataatc 264

                                                                       
Query: 65  acagtactgaggaagaggaggccctggggctctctggacaacccacctagcctacttaga 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 acagtactgaggaagaggaggccctggggctctctggacagcccacctagcctacttaga 324

                                                                       
Query: 125 gagttccaggccgataagacactgtcaggagaacagaatggatcacaccctagaaacaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagttccaggccgataagacactgtcaggagaacagaatggatcacaccctagaaacaac 384

                                                                       
Query: 185 atggagattagcctctgcccttcacatgcagcaagtgtctttgtaccttcacaaaaaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atggagattagcctctgcccttcacatgcagcaagtgtctttgtaccttcacaaaaaggt 444

                                                                       
Query: 245 ttttgtatacagttttacacacaggaaaacctgcttcacaaaatccatcttttaacatca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttgtatacagttttacacacaggaaaacctgcttcacaaaatccatcttttaacatca 504

                                                                       
Query: 305 gagttgctggtttggttcttatgtttctgcctgctagagtaaaacttctatgttcacaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagttgctggtttggttcttatgtttctgcctgctagagtaaaacttctatgttcacaca 564

                                                           
Query: 365 ctggtgaaatcca--gagacacaaagctgcttgcttgctaattttcag 410
           |||||||||||||  |||||||||||| ||||||||||||||||||||
Sbjct: 565 ctggtgaaatccaaagagacacaaagccgcttgcttgctaattttcag 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 812
Length adjustment: 9
Effective length of query: 401
Effective length of database: 803
Effective search space:   322003
Effective search space used:   322003
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)