Query= MSMg01no500_k13.b1 MSMg01no500_k13.b1 CHROMAT_FILE:
MSMg01no500_k13.b1 PHD_FILE: MSMg01no500_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:19 2005
(623 letters)
>mm_chr1_83355997_83357019
Length = 1023
Score = 1180 bits (610), Expect = 0.0
Identities = 619/623 (99%), Gaps = 2/623 (0%)
Strand = Plus / Plus
Query: 1 gaaaacagaattatctgttanactagatcacacattttcctgttaagggtggtttgtgat 60
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 gaaaacagaattatctgttaaactagattacacattttcctgttaagggtggtttgtgat 260
Query: 61 ccatctttggctctaccatctttgtgtctaccatcaagatctaagcggctttagaacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatctttggctctaccatctttgtgtctaccatcaagatctaagcggctttagaacata 320
Query: 121 tttaagttgaaccttgtgactctgcctatgtttgatcactttgggattgtaataaaaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaagttgaaccttgtgactctgcctatgtttgatcactttgggattgtaataaaaggc 380
Query: 181 agtttcatagggttaaacctactaacaattgttcagaaacaatcgtagaattaatgaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtttcatagggttaaacctactaacaattgttcagaaacaatcgtagaattaatgaggt 440
Query: 241 tattttaaaaacttttaaatcttatctgtacatagatatacctatttacataaatgtctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattttaaaaacttttaaatcttatctgtacatagatatacctatttacataaatgtctt 500
Query: 301 tatgcatagattcatataggtatacagaaatattacatagatataatgataaaatccttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgcatagattcatataggtatacagaaatattacatagatataatgataaaatccttt 560
Query: 361 agaatggagtttaatctgtgttcattaaggcattttcgtgctacgtagccaattgcccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaatggagtttaatctgtgttcattaaggcattttcgtgctacgtagccaattgcccaa 620
Query: 421 cattgctgttacttagggtctcttcatcactcccaactggttttaatttttttttttttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 cattgctgttacttagggtctcttcatcactcccaactggttttaattttttttttt--g 678
Query: 481 agtaaacacccagcttccactaggtatcagttcagtagtttttagatgtgtgtttctaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agtaaacacccagcttccactaggtatcagttcagtagtttttagatgtgtgtttctaaa 738
Query: 541 cgagaaaggaacatggccaccttccctcctatagaattggcagtaaccaagctaatacca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cgagaaaggaacatggccaccttccctcctatagaattggcagtaaccaagctaatacca 798
Query: 601 tgaattactctttcattattaag 623
|||||||||||||||||||||||
Sbjct: 799 tgaattactctttcattattaag 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_k13.g1 MSMg01no500_k13.g1 CHROMAT_FILE:
MSMg01no500_k13.g1 PHD_FILE: MSMg01no500_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:19 2005
(593 letters)
>mm_chr1_83522681_83523674
Length = 994
Score = 1067 bits (552), Expect = 0.0
Identities = 578/594 (97%), Gaps = 13/594 (2%)
Strand = Plus / Minus
Query: 1 ttcacatggtagattttatgtatattggttacagcaaatatatatatatatatatatata 60
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 646 ttcacatggtagattttatgtatattggttacagcaa------------atatatatata 599
Query: 61 tatatgagagataaaactgaaactctcaaattcttctaaatgaagatgttaagatattgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 598 tatatgagagataaaactgaaactctcaaattcttctaaatgaagatgttacgatattgc 539
Query: 121 atttattttactttaggtactctaaacacaactctgttgaagaaaacaaatcaaattaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 atttattttactttaggtactctaaacacaactctgttgaagaaaacaaatcaaattaac 479
Query: 181 caaccacatttaggcctgttatggcctgaagaaagggagggaggggaaagggagtgagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 caaccacatttaggcctgttatggcctgaagaaagggagggaggggaaagggagtgagag 419
Query: 241 gctagagagtatagaatggaagaaaggt-gggggggaatacgtgttttacatagcaaaaa 299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 418 gctagagagtatagaatggaagaaaggtggggggggaatacgtgttttacatagcaaaaa 359
Query: 300 ctaaattaattaattaaaatccattacgagtaagcctgtcatttagagcctgtaaaagaa 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gtaaattaattaattaaaatccattacgagtaagcctgtcatttagagcctgtaaaagaa 299
Query: 360 ctctgttgaaaatgaaatgttacaagatagttttcctagtttgtattctctctgtgtgat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ctctgttgaaaatgaaatgttacaagatagttttcctagtttgtattctctctgtgtgat 239
Query: 420 ttaccactgacaaaaattggcttgtagaggaatggattcattttatttaggtttctacat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ttaccactgacaaaaattggcttgtagaggaatggattcattttatttaggtttctacat 179
Query: 480 tacaatctgtcaccataggaagccagcacaggaacttcaggcaggaagtcaagacaggaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tacaatctgtcaccataggaagccagcacaggaacttcaggcaggaagtcaagacaggaa 119
Query: 540 ctgaagaagagaccacagaggaatgcttttactgcctttctcttcatgacttgc 593
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 118 ctgaagaagagaccacagaggaatgcttttactgcctttctcttcgtgacttgc 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 994
Length adjustment: 10
Effective length of query: 583
Effective length of database: 984
Effective search space: 573672
Effective search space used: 573672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
