BAC Information

Click to search

BAC

Clone NameMSMg01-500P14
Chromosome1 (Build37)
Map Location 67,443,042 - 67,443,289
singlet/doubletsinglet
Overlap genenone
Upstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500P14.T7 (MSMg01no500_p14.b1)MSMg01-500P14.TJ (MSMg01no500_p14.g1)
ACCAG576683AG576684
length773582
length of high quality
(start - end)
94 (130 - 223)248 (313 - 560)
definitionCHROMAT_FILE: MSMg01no500_p14.b1 PHD_FILE: MSMg01no500_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:43 2005CHROMAT_FILE: MSMg01no500_p14.g1 PHD_FILE: MSMg01no500_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTCACCCCGTGNATCATTACGCGGAANNCAGAGCT
GTCTCAATCACCACGAAGAAGNACCAGGGGGNACAGGGAGGNNCAAAGCC
AGACTAAGAACATAGACATCAGNNTTGNGATGGCTCTGAGAAGATGATAC
CATGACTAACTTGCTCATTTTCTTTCACACTAGAGTTAATTGATGATATT
TTGTACAGGTCTACAACAGGAGATGTTCAGGTTCTTACTCTTGTCCCGTG
ACTGTGATGACACGTTGACTTTAAGCCTTTAATCCAATTATTTTTTTTCG
CGGAAAAANTAAANCACGAACAATTGGGTTAAGCTACAACCTGACCCAAT
CCTATGCTTCTATATAACACTGCCCCTTTAGCCCAGCCAAAGATTAAAGT
CCCATTTTAGGGGCTAAACCGAACATACACCCAAACCGGAACCCAAAACA
ATCCAGGGGGTGTGAACCCAATCGTTGGCAATTTTTCTTGACCCCCCCCC
CCCCCCCCCCCCTCTTCCCAATAATTTCCCATGGGGGGATTCTCTCCTCC
AAAAATTTTTTATATTTTGTTTTTCAATAAATAAACCCTTGGTTCTTGGG
GCCCTCCCCCGAATCTTTTCTTCCTTTAAACAAAACCCCTAGAAAAGATT
TTTTTTCTTTTTCTCCACCTTTTTGCCCCCCCCCCCGTGCTTAATACCGG
GGGGAAATTTCACCAATTGTTATCACCTCTCCAAATTCCTGCCTCCCTCT
CTTTCGGGTATGTCTCTCCCTTC
GTTTCCCAGAATAGAGGACCACNGNGAGCATGATCATCGGGCCTGGGACA
TGGAAAGACATGCCTTGTGAAAGATACTTTCTCTCTTGAGATCTCCAGCA
TTTTTAAGATTTCAGCAAAAGTCTGTGAATACTAGGATTAATGTAAAATG
TTTATGAACATTGACAATGTATAAAAATAAACAGAGTCCTTTATGTAGCC
CTGAATTATCAACAGATAAACAGTTTCGCACACTTCGCTGGNACGTTTTG
ATATGAGTAGTTGAGAGGTTAGAGCTTGTTCTAGGTAAGAGAAGAAGCAT
AATAGAAAACAAGAAGCACACCAAAAGAAGCTGCTAAGTTAACTCAGTAC
TTGAAGGTACACCCACACCATATGTGTGAAGAAAATTCTGTATTCTTCAA
CAAAACATAATAGTAACACAATATTATTCTGACTTAATTTTAAACACATA
TCCACATATCAAATCTCCAGCAGATTTCCCAGAGTACTTTCACATTCTAT
TTTTTTCTGCCAGCAAATCCATATTATTATACAAATGTTTTGAGATTATA
AGAAAAAAATCCTTTCACTTTTGTCAGTGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_p14.g1 MSMg01no500_p14.g1 CHROMAT_FILE:
MSMg01no500_p14.g1 PHD_FILE: MSMg01no500_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:43 2005
         (248 letters)



>mm_chr1_67442842_67443489
          Length = 648

 Score =  449 bits (232), Expect = e-131
 Identities = 244/248 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagcacaccaaaagaagctgctaagttaactcagtacttgaaggtacacccacaccata 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||  | ||||||
Sbjct: 448 gaagcacaccaaaagaagctgctaagttaactcagtacttgaaggcacacaaagaccata 389

                                                                       
Query: 61  tgtgtgaagaaaattctgtattcttcaacaaaacataatagtaacacaatattattctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgtgtgaagaaaattctgtattcttcaacaaaacataatagtaacacaatattattctga 329

                                                                       
Query: 121 cttaattttaaacacatatccacatatcaaatctccagcagatttcccagagtactttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cttaattttaaacacatatccacatatcaaatctccagcagatttcccagagtactttca 269

                                                                       
Query: 181 cattctatttttttctgccagcaaatccatattattatacaaatgttttgagattataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cattctatttttttctgccagcaaatccatattattatacaaatgttttgagattataag 209

                   
Query: 241 aaaaaaat 248
           ||||||||
Sbjct: 208 aaaaaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)