BAC Information

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BAC

Clone NameMSMg01-501I07
Chromosome1 (Build37)
Map Location 114,627,157 - 114,627,483
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
Downstream geneLOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501I07.T7 (MSMg01no501_i07.b1)MSMg01-501I07.TJ (MSMg01no501_i07.g1)
ACCAG577094AG577095
length695722
length of high quality
(start - end)
327 (308 - 634)652 (58 - 709)
definitionCHROMAT_FILE: MSMg01no501_i07.b1 PHD_FILE: MSMg01no501_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:22 2005CHROMAT_FILE: MSMg01no501_i07.g1 PHD_FILE: MSMg01no501_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTATTTTCAGAGAATGCGCGGAATTCTCACCTGATTACTACAAA
ATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGG
CTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AAGGGAACACTCCTCCATAAATAAATAAATCTTTTAAAAAAGAAGTATCT
TTAAAAACAAAAGAATGATTAGCAGAGCTCTGGATTAACTTCATGCCTTG
TTTTTCTGAAAAACAAGTAAAACATATATGCCTAATATGAGCCAGTTCTA
TGGATTAATGACCCAGGTATTACATGTCTCCATTATTCTACATCATTGGT
TTGAGGTTTGCCAAGCTCTAGCTTTAAATGATCTTACTAAATAAGGCATG
CGTTGCTTTTTTCCTAACTTGTAGAAAAAGAACAATAATAGATAAAAATC
TGGTTGATTTTGATGAAGGCAAAATATTGAGTAAGAAATGTCAGCAGTGA
AACAAACATTACTACATAAAATGTTCTATTCAATATTAAGCACCACCAGC
TGGCTGGATACAACCAAAGTTTAAAGGAGGAAGATTTTATTGTTGTTCTA
CAATGATAGTCATGATATTAATTTTTGAAGCCATCTATATGCTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGCTGCACACAGAGAAACAGAAACCACAATCAGTAGACTCCTT
TGGAGAACATCTTCAAACAGGACAACAGCCAGACTGCTTCTCTGAAGACC
CAACAGTCTGAAGGCCTCCAAGGAGATATACTGCAGCCAGGGCAACAGAT
AAGCATATTATCTGCCCTCTGAAGTTCCCACAGTTAGATGGGCCCACAGG
TGGTCTGCCATATCAAGAACCACAAGACTACCAGGAGACCTTAAGCAACC
CAGGGATGATTAGAGGCAGACTCCAGACAGAGTCACCCAGACCAGCAAAC
ACCAAGGGCAACCAGATGGCAAGAGGCTAGCACAAGATCATAAGCAACAG
AAGCCAATACATGTGGGCACCATCAGAACCCAGTTCTTTCACCACAGCAA
GTCCTGAGTACACAAACACATTTTGAAAATCAGAAAGCTGACCTAAGATT
ATATCTCATGAAATAATAGAGTCCTTTAAGGAGGGTATAAATGATTCACA
GAAAGAGAGGATAACACAATCAAACATGTGAAAGAATTGAATAAAGCAGT
CCAAGACCTAAAAGTAGAAGTAGAAACACCAAAGAAAATGCAAATGGAAA
AATCCTGGACATGAAAAAATCTGAATAAGAAGTGAAGTATTACAGATGTA
AGTATCACCAACAGAATACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_i07.b1 MSMg01no501_i07.b1 CHROMAT_FILE:
MSMg01no501_i07.b1 PHD_FILE: MSMg01no501_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:22 2005
         (327 letters)



>mm_chr1_114626957_114627683
          Length = 727

 Score =  617 bits (319), Expect = 0.0
 Identities = 325/327 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaaacaagtaaaacatatatgcctaatatgagccagttctatggattaatgacccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaaacaagtaaaacatatatgcctaatatgagccagttctatggattaatgacccagg 260

                                                                       
Query: 61  tattacatgtctccattattctacatcattggtttgaggtttgccaagctctagctttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattacatgtctccattattctacatcattggtttgaggtttgccaagctctagctttaa 320

                                                                       
Query: 121 atgatcttactaaataaggcatgcgttgcttttttcctaacttgtagaaaaagaacaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgatcttactaaataaggcatgcgttgcttttttcctaacttgtagaaaaagaacaata 380

                                                                       
Query: 181 atagataaaaatctggttgattttgatgaaggcaaaatattgagtaagaaatgtcagcag 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagacaaaaatctggttgattttgatgaaggcaaaatattgagtaagaaatgtcagcag 440

                                                                       
Query: 241 tgaaacaaacattactacataaaatgttctattcaatattaagcaccaccagctggctgg 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaacaaacattactacgtaaaatgttctattcaatattaagcaccaccagctggctgg 500

                                      
Query: 301 atacaaccaaagtttaaaggaggaaga 327
           |||||||||||||||||||||||||||
Sbjct: 501 atacaaccaaagtttaaaggaggaaga 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)