Query= MSMg01no501_k15.b1 MSMg01no501_k15.b1 CHROMAT_FILE:
MSMg01no501_k15.b1 PHD_FILE: MSMg01no501_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:32 2005
(627 letters)
>mm_chr1_80115062_80116088
Length = 1027
Score = 928 bits (480), Expect = 0.0
Identities = 513/530 (96%), Gaps = 11/530 (2%)
Strand = Plus / Plus
Query: 1 ggagattagtgaagaaagggtagctgtaaaatgatttatgagatatcaaatactgttcat 60
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 200 ggagattagtgaagaaagagtagctataaaatgatttatgagatatcaaatactgttcat 259
Query: 61 accaatatgcaaaatcaagtttctttttttaaaaactgatttatttattttta-ttttat 119
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 260 accaatatgcaaaatcaagtttcttttttaaaaaactgatttatttatttttatttttat 319
Query: 120 gtgaatttggtgttttgcttgcacttaggtctgtatgaaggtatcagatctcctggaact 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtgaatttggtgttttgcttgcacttaggtctgtatgaaggtatcagatctcctggaact 379
Query: 180 agagttatagacaactgtgagctgccatgtgggtgctggaaattgaccctgggtcctctg 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agagtcatagacaactgtgagctgccatgtgggtgctggaaattgaccctgggtcctctg 439
Query: 240 gaagagcaaccagtgctcttaactattgagccatctgtacagccccacaaaactaaattt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaagagcaaccagtgctcttaactattgagccatctgtacagccccacaaaactaaattt 499
Query: 300 ctaatgggagactgtagaatcaacacaattactggaatgtcacctctctaccaagtcttg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctaatgggagactgtagaatcaacacaattactggaatgtcacctctctaccaagtcttg 559
Query: 360 aatgacttggaacataaagctacccttgcagagtcatagccacatcaaagaaatcattgg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aatgacttggaacataaagctacccttgcagagtcatagccacatcaaagaaatcattgg 619
Query: 420 tctgccatgtaacaacagtatcattttactgacactaatcacattctcagtattatgagt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctgccatgtaacaacagtatcattttactgacactaatcacattctcagtattatgagt 679
Query: 480 gcgt----------acacacacacacacacacacacacacacacacacac 519
| || ||||||||||||||||||||||||||||||| ||||
Sbjct: 680 gtgtgtgcgcgcgcacacacacacacacacacacacacacacacatacac 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 122
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_k15.g1 MSMg01no501_k15.g1 CHROMAT_FILE:
MSMg01no501_k15.g1 PHD_FILE: MSMg01no501_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:32 2005
(554 letters)
>mm_chr1_80268204_80269157
Length = 954
Score = 1027 bits (531), Expect = 0.0
Identities = 549/555 (98%), Gaps = 2/555 (0%)
Strand = Plus / Minus
Query: 1 tgacttttacttaatttcatatttccatagatatatgtgtgaactaaatcatatgtgtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tgacttttacttaatttcatatttccatagatatatgtgtgaactaaatcatatgtgtag 695
Query: 61 ctcttttaattatcccattgacatgataacagtgagttaaaaatcacaagcctttctcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ctcttttaattatcccattgacatgataacagtgagttaaaaatcacaagcctttctcca 635
Query: 121 ggtgtttttatttaatttctcctgtataacattgtattcataatatatacaaaagttatc 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ggtgtttttacttaatttctcctgtataacattgtattcataatatatacaaaagttatc 575
Query: 181 aattagagctctgatgtcttagattttgtttttaaagttaacttccattagtcaaatctt 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aattagagctccgatgtcttagattttgtttttaaagttaacttccattagtcaaatctt 515
Query: 241 attttgatccc-ataggcattatgtatagctgatccaggttctgaagtttgtttttagtg 299
||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 attttgatcccaagaggca-tatgtatagctgatccaggttctgaagtttgtttttagtg 456
Query: 300 agagcttgaacatagtgtgctgtgctgtaagtaaacttagaatagtgaatagtcccgaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 agagcttgaacatagtgtgctgtgctgtaagtaaacttagaatagtgaatagtcccgaga 396
Query: 360 ctgttgtagcagtttattttatctgaatgctgtcaagttcccggtggtgcctgcagatgg 419
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ctgttgtagcagtttattttgtctgaatgctgtcaagttcccggtggtgcctgcagatgg 336
Query: 420 catttttagagaatttgttgtgtactttttggaccagaaatgcccttgccttttaacaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 catttttagagaatttgttgtgtactttttggaccagaaatgcccttgccttttaacaat 276
Query: 480 ttatagtttgtccaaataataagattttagtagcaagtcataatattcaggagattcttt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttatagtttgtccaaataataagattttagtagcaagtcataatattcaggagattcttt 216
Query: 540 attgtaaattgattc 554
|||||||||||||||
Sbjct: 215 attgtaaattgattc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
