Query= MSMg01no501_l08.b1 MSMg01no501_l08.b1 CHROMAT_FILE:
MSMg01no501_l08.b1 PHD_FILE: MSMg01no501_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:35 2005
(590 letters)
>mm_chr1_28423557_28424547
Length = 991
Score = 1060 bits (548), Expect = 0.0
Identities = 580/591 (98%), Gaps = 1/591 (0%)
Strand = Plus / Plus
Query: 1 aaaattactttagaataaacaataacaaagtcagtaaaaaaa-ttcagttatattctcca 59
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 aaaattactttagaataaacaataacaaagtcagtaaaaaaaattcagttatattctcca 260
Query: 60 aaaaactattttaaatttcaataactaatgtgaattctgcaagtaagtcctttcagttac 119
|||| |||||||||||||||||||||||| |||||||||||||||||| ||||||| |||
Sbjct: 261 aaaagctattttaaatttcaataactaatatgaattctgcaagtaagttctttcagctac 320
Query: 120 aatggcctcatacagaattaacaggttcgaaacatcctaatagtttctcctgctaggaag 179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 aatggcctcatacagaattaacaggttcaaaacatcctaatagtttctcctgctaggaag 380
Query: 180 aagaaaggaaatatttcattcctttcaatttcttaaattgagggaaattttaagaaagct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaaaggaaatatttcattcctttcaatttcttaaattgagggaaattttaagaaagct 440
Query: 240 taaaattantcactaaagatcttaaaggaagattgttttctatgaaagtaattaaagata 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaattattcactaaagatcttaaaggaagattgttttctatgaaagtaattaaagata 500
Query: 300 aaaatgcaccaatcatttaaataatcaagaataagtggtctaattaacaaatcaatcttg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaatgcaccaatcatttaaataatcaagaataagtggtctaattaacaaatcaatcttg 560
Query: 360 ggataaaaaagcatatatcaaaagaaaagttagaaaaacagaaccaaaatcaaatgtttt 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaataaaaaagcatatatcaaaagaaaagttagaaaaacagaaccaaaatcaaatgtttt 620
Query: 420 tgtgactgcatattcattttatggctatttactgtaattaattattaaaatttttgaaaa 479
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgactgcatatttattttatggctatttactgtaattaattattaaaatttttgaaaa 680
Query: 480 tgagcatgtgtattttttcaaagatatgacagttatgtaaagtttgacaatatggtaaaa 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgagcatgtgtattttttaaaagatatgacagttatgtaaagtttgacaatatggtaaaa 740
Query: 540 tataacaggataattattaataaaaatgattataattagaaatgacagtta 590
|||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 tataacaggataattattaataaaaatgataataattagaaatgacagtta 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 991
Length adjustment: 10
Effective length of query: 580
Effective length of database: 981
Effective search space: 568980
Effective search space used: 568980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_l08.g1 MSMg01no501_l08.g1 CHROMAT_FILE:
MSMg01no501_l08.g1 PHD_FILE: MSMg01no501_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:35 2005
(328 letters)
>mm_chr1_28585472_28586199
Length = 728
Score = 609 bits (315), Expect = e-179
Identities = 324/327 (99%)
Strand = Plus / Minus
Query: 2 tcataaaagaaggtagttttgtcatttaatggactaagaagaccaatttgaatagcctat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tcataaaagaaggtagttttgtcatttaatggactaagaagaccaatttgaatagcctat 469
Query: 62 tattaaccatgaaaggaatatatggaaccagaatttgaaaaagtagttcaggatagaaaa 121
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tattgaccatgaaaggaatatatggaaccagaatttgaaaaagtagttcaggatagaaaa 409
Query: 122 aagaaatcatcaaaattttgatgtaggggacaaccatgtcaagttttgatttaagtgagt 181
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aagaaatcatcaaaattatgatgtaggggacaaccatgtcaagttttgatttaagtgagt 349
Query: 182 tggaaatgtgtaataaatgttggggtagaagatatccatccatgtattaccataatcagt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tggaaatgtgtaataaatgttggggtagaagatatccatccatgtattaccataatcagt 289
Query: 242 gaaccttatactaaagatacagggcaggtggtatgaaataccattagaagaaaggttctg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gaaccttatactaaagatacagggcaggtggtatgaaataccattagaagaaaggttctg 229
Query: 302 ctctatttctcttttctttcattatcg 328
||||||||||||||||||||| |||||
Sbjct: 228 ctctatttctcttttctttcaatatcg 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
