BAC Information

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BAC

Clone NameMSMg01-501M02
Chromosome1 (Build37)
Map Location 185,786,340 - 185,786,864
singlet/doubletsinglet
Overlap genenone
Upstream geneSusd4, Tlr5, EG666649
Downstream gene1700056E22Rik, Dusp10, EG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501M02.T7 (MSMg01no501_m02.b1)MSMg01-501M02.TJ (MSMg01no501_m02.g1)
ACCAG577274AG577275
length712757
length of high quality
(start - end)
621 (65 - 685)80 (159 - 238)
definitionCHROMAT_FILE: MSMg01no501_m02.b1 PHD_FILE: MSMg01no501_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:38 2005CHROMAT_FILE: MSMg01no501_m02.g1 PHD_FILE: MSMg01no501_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGGCGCGGAATTCCATATC
TTTCCACAAGCGGGTATTGATGGTGTTGAGCCTTGAATGTAGCAGGTGGT
GCTGGTGAAACCATGCATGAACTCTTCTCTAGATATCTGGGATCTACAAA
GAATGAGACCTAGATAGACTAGAGCTTCCTCAGGATGTCCTTATTAACAA
GAGACTGAGAGCATCAAGTCCAACCTGGGTGGCCAGACAATCATCTTACT
TTAAATCACCATTTGGCCCCAAGCAAACACACCAGCAGAGCTCATCTAAA
CCTGTAGACTTTTTTTCTGGCAGGGCACTGAGTGCAGCAGCTGGTGTCGC
TGCAATGGAGACAGCCTCCACGATGCAGCTAGGGCTTCTGATCTCATTCT
AGGAAGTTCTTTTAGGTGACTTAAACTGGAGTCATCTTGCTTTCCTGGTA
GTCTGCTGTTCCTTTGTTTGCCTTACCTCTGGGCAAACCTGTAGCCCTTG
TTATTTCTACCACTCTACTGACAGTAGACAGACAGATACACAAGCTTGTG
CACACACACATGCATAGACACACAGATACACACACACACACACACGCACA
CAGACACACATTTCTTACCATGTTTTGGACCTGAGGTTTCACTTTCTTAC
GTAAATTGTTTTGAATTTTATCTATTTATTTTGTTTTGTTTCTGGTCCTC
TTTGCCTTTCTT
GGACCGTGTTACGTCCACGTCNCCCCGCTTCCCCTTCTCCTACCTTCCGG
TTTTTCTGTGANTATTCTCNNTGTGCTCCTCACCCCCTATGATATGTTGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TCCCGGATTCCCCCCCCAGCTCTGGCATGAGTTTGACAATTTCCTGTTTT
CTGCTGCCTGCCCTGTCATAAAAATTCAGCACAGAAGAGCTATTCTAAGT
ATCAAGGGCAGATATTAAACAGGTCTGTTTAATAAAGAGACTGATGTGGG
ACTGAAGGGTTTTATAAAACCGGCATGGTAAATTTTTTAAAAGGAAAAAA
TGTGGCACCAGGCAATGGAAAATCCCCCATTGGAAGGGCAAACAAAAAAT
TTCCCGGGGCCAAAAAAGAACCCCTCTACCTTTTTTCCCCCCTTTTACCC
GAAAGAAAACCTTTTCCCAAATTTTTCCTTTTTTACCCGGAAAACCCCTT
TTGAAAACAACGTTTAAATTTTTATATAACCCCCGGGGGTTTCCCTGGGC
CAAAAAAGGAACCCCTTTTTCCCCCAGAGGAAGAACCTCTTGGGAAGGGG
CCCCCTTAAAAAACCCCCAACTCTCCTTTATATTTTTTTTACCCAAAAAT
TCTCCAAAAAAACCCCTTTTTTTGGGGGAAAAACAACACCCTCTATAAAA
GATGAGGGGGCCTCCCCCTTGGGAGAAAAAAAAACACAGGATGTTTTTGG
GGGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_m02.b1 MSMg01no501_m02.b1 CHROMAT_FILE:
MSMg01no501_m02.b1 PHD_FILE: MSMg01no501_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:38 2005
         (621 letters)



>mm_chr1_185786178_185787199
          Length = 1022

 Score =  930 bits (481), Expect = 0.0
 Identities = 514/525 (97%), Gaps = 1/525 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   ggtgttgagccttgaatgtagcaggtggtgctggtgaaaccatgcatgaactcttctcta 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggtgttgagccttgaatgtagcaggtggtgctggtgaaaccatgcatgaactcttctcta 628

                                                                       
Query: 68  gatatctgggatctacaaagaatgagacctagatagactagagcttcctcaggatgtcct 127
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 627 gatatctgggatctacaaagaatgagacctagatagactggagcttcctcaggatgtcct 568

                                                                       
Query: 128 tattaacaagagactgagagcatcaagtccaacctgggtggccagacaatcatcttactt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tattaacaagagactgagagcatcaagtccaacctgggtggccagacaatcatcttactt 508

                                                                       
Query: 188 taaatcaccatttggccccaagcaaacacaccagcagagctcatctaaacctgtagactt 247
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 507 taaatcaccatttgtccccaagcaaacacaccagcagagctcatctaaacctgtagacat 448

                                                                       
Query: 248 tttttctggcagggcactgagtgcagcagctggtgtcgctgcaatggagacagcctccac 307
           |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcactctggcagggcactgagtgcagcagctggtgtcgctgcaatggagacagcctccac 388

                                                                       
Query: 308 gatgcagctagggcttctgatctcattctaggaagttcttttaggtgactt-aaactgga 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 387 gatgcagctagggcttctgatctcattctaggaagttcttttaggtgacttaaaagtgga 328

                                                                       
Query: 367 gtcatcttgctttcctggtagtctgctgttcctttgtttgccttacctctgggcaaacct 426
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 327 gtcatcttgctttcctggtagtctgctgttactttgtttgccttacctctgggcaaacct 268

                                                                       
Query: 427 gtagcccttgttatttctaccactctactgacagtagacagacagatacacaagcttgtg 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 267 gtagcccttgttatttctaccactctactgacagtagacagacagatacacaagcatgtg 208

                                                        
Query: 487 cacacacacatgcatagacacacagatacacacacacacacacac 531
           |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 207 cacacacacatgcatagacacacagatacacagacacacacacac 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space:   618332
Effective search space used:   618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)