XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCCCTAC
CCCTTTGCTCTTTTTAACTGTTCAGGCCAGTAAGATAGGCTATTGGGTAG
AGGATTGTGGACTAAACAGCTCACCTTTGAATTCTATGGTTACTACTTGA
TGACTCTACCACACAGGGGGATTTCATAGGTTTTGTGACTGAAAAATAAC
AATGGTAATTCTTAATTTATATAATTTTAGGAGATATTGGGAATGGACTA
TGATTAGCATGTAATGGTCTTCAAGTTAATAGTGTCTTCCAAGTGATGCC
CCAACTGTTATGTCCCATTGTTACCTCTCTAGGAGACTGTGGCTGGATGT
AGATATTGTAAAGCTTTTTTGCCCTAGAAATTCTGCCCCTTCGTGAAGCA
ATTTTCTTGTAGGTTTCACATGCCATCCAGAATTTAATGTTCTCATCACT
GTGCTCCAATTTTAAATATGCTGTGTACACTATTGGGCCATCTAAAAGTA
GAAAAAAATGTGATTGTTTTTATGGGTTAACAGAATTTAAACAACAATTC
ATACAGTTTAATACAGAAGCCCAAAGAAGAGCTCTAAAGATACAGAACAA
CTGGATACTCTCTAAGGTCCACACTCTCAGGTCTCTGTACATCTGAAGCA
TGTTCAAGGATGCCATGAGTTGGTGAAGTTACCCCTTTGTTCTGAGTCAC
TCAGTGGAAATT

CCTGGCGGCCGCCTTTTCAACAAAGGTAGGNGACACTATAGAATTATCCA
AAAAAAGTCCTAGGAAAGAATCCACAGAACTCAAGAAGGCTAACAAGCTG
AAGGGCCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCACAACCA
AGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACACTTCCATACTG
CTGTTCATCACCAAGGAAGTCAGGACTGGAACTCATTTAGGTCAGAAAGC
AGGAGCTGATGCAGAGGTCATGGAGGGATGTTCATGCTTCCCCTGGCTTG
CTCAGTCNGCTCTCTTACAGAACCCAAGACTGCCAGTCCAGAGATGGTCC
CACCCATAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAACACCCCA
CAACTGGATCTCATGGAGGCACTTCCCCAACTGAAGCTCCTTTCTCTGTG
ATAACCCAAGTTGACACATAAAAGCAGTCAGTACATGGCCCAAGTGAGGA
AGCCTCAATTCCACTTAGGAGGGAGATGAAAGCAATCACGGGAGGAGGGA
GGGAGAGAGGGAACTGGGTGGGAAAGGCAACAAGGAGGTGAAGAGGGGAA
CATGATCAGGTATTGGGGGGAACAGGACTGAAGTCCTGAGGGCTAGCATA
AAGAATCTGAACAGGTAACCTCGGAAAATAGGAGGATGGGGACATCTTCT
AGACTGTA

Query= MSMg01no501_m09.b1 MSMg01no501_m09.b1 CHROMAT_FILE:
MSMg01no501_m09.b1 PHD_FILE: MSMg01no501_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:39 2005
         (671 letters)



>mm_chr1_145987346_145988417
          Length = 1072

 Score = 1261 bits (652), Expect = 0.0
 Identities = 664/668 (99%), Gaps = 1/668 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcc-ctacccctttgctctttttaactgttcaggccagtaagataggctatt 63
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttccacaacccctttgctctttttaactgttcaggccagtaagataggctatt 264

                                                                       
Query: 64  gggtagaggattgtggactaaacagctcacctttgaattctatggttactacttgatgac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggtagaggattgtggactaaacagctcacctttgaattctatggttactacttgatgac 324

                                                                       
Query: 124 tctaccacacagggggatttcataggttttgtgactgaaaaataacaatggtaattctta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctaccacacagggggatttcataggttttgtgactgaaaaataacaatggtaattctta 384

                                                                       
Query: 184 atttatataattttaggagatattgggaatggactatgattagcatgtaatggtcttcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttatataattttaggagatattgggaatggactatgattagcatgtaatggtcttcaa 444

                                                                       
Query: 244 gttaatagtgtcttccaagtgatgccccaactgttatgtcccattgttacctctctagga 303
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 445 gttaatagtgtcttccaagtgatgccccaactgccatgtcccattgttacctctctagga 504

                                                                       
Query: 304 gactgtggctggatgtagatattgtaaagcttttttgccctagaaattctgccccttcgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gactgtggctggatgtagatattgtaaagcttttttgccctagaaattctgccccttcgt 564

                                                                       
Query: 364 gaagcaattttcttgtaggtttcacatgccatccagaatttaatgttctcatcactgtgc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaagcaattttcttgtaggtttcacatgccatccagaatttaatgttctcatcactgtgc 624

                                                                       
Query: 424 tccaattttaaatatgctgtgtacactattgggccatctaaaagtagaaaaaaatgtgat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccaattttaaatatgctgtgtacactattgggccatctaaaagtagaaaaaaatgtgat 684

                                                                       
Query: 484 tgtttttatgggttaacagaatttaaacaacaattcatacagtttaatacagaagcccaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtttttatgggttaacagaatttaaacaacaattcatacagtttaatacagaagcccaa 744

                                                                       
Query: 544 agaagagctctaaagatacagaacaactggatactctctaaggtccacactctcaggtct 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agaagagctctaaagatacagaacaactggatactctctaaggtccacactctcaggtct 804

                                                                       
Query: 604 ctgtacatctgaagcatgttcaaggatgccatgagttggtgaagttacccctttgttctg 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctgtacatctgaagcatgttcaaggatgccatgagttggtgaagttacccctttgttctg 864

                   
Query: 664 agtcactc 671
           ||||||||
Sbjct: 865 agtcactc 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1072
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1062
Effective search space:   701982
Effective search space used:   701982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)