Query= MSMg01no501_p12.b1 MSMg01no501_p12.b1 CHROMAT_FILE:
MSMg01no501_p12.b1 PHD_FILE: MSMg01no501_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:53 2005
(608 letters)
>mm_chr1_185899957_185900968
Length = 1012
Score = 1120 bits (579), Expect = 0.0
Identities = 603/615 (98%), Gaps = 10/615 (1%)
Strand = Plus / Plus
Query: 1 gactacatttgacataaatatttttgtgaacatttgcttacaaatgttacaccagaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gactacatttgacataaatatttttgtgaacatttgcttacaaatgttacaccagaaata 260
Query: 61 ttttgacattgatttctttattcaaatagcttgcctgccaagagtcatttaaatttttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgacattgatttctttattcaaatagcttgcctgccaagagtcatttaaatttttct 320
Query: 121 ttcattagaaaagtggaaattgaacataataggaactgagagctagctggaattacgtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcattagaaaagtggaaattgaacataataggaactgagagctagctggaattacgtta 380
Query: 181 gtctgatatagaatatgaagtagtcaaaaagtaaatctctttttt-ggcatttccgtact 239
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gtctgatatagaatatgaagtagtcaaaaagtaaatctctttttttggcatttccgtact 440
Query: 240 gtct----tcttttttttgttttgttttgtttctgtcaactagggcaaactgaaagagtc 295
||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 gtcaacagtcttttt---gttttgttttgtttctgtcaactagagcaaactgaaagagtc 497
Query: 296 tgatacacagtgacttgggatgcctggcaggcttgtcattttctaagtctaaaagttgga 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgatacacagtgacttgggatgcctggcaggcttgtcattttctaagtctaaaagttgga 557
Query: 356 gtcctggtggggtataaaattctctctctctctc--ccctccctcctcttctttctcttt 413
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 558 gtcctggtggggtataaaattctctctctctctctcccctccctcctcttctttctcttt 617
Query: 414 gcttttttatcatgtcttctgcaaacgaagggaaggactcaatagctacatggacatgat 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gcttttttatcatgtcttctgcaaacgaagggaaggactcaatagctacatggacatgat 677
Query: 474 ttgtgtgtttggaagtttatgagcttagaggagaaggtctgccttggggcaacaggaatc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttgtgtgtttggaagtttatgagcttagaggagaaggtctgccttggggcaacaggaatc 737
Query: 534 ctgccaaccagcataccaagaattctgagagggactccagtcttttctcctaatctgctc 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ctgccaaccagcataccaagaattctgagagggactccagtcttttctcctaatctgctc 797
Query: 594 tgagtcacttcacct 608
|||||||||||||||
Sbjct: 798 tgagtcacttcacct 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1012
Length adjustment: 10
Effective length of query: 598
Effective length of database: 1002
Effective search space: 599196
Effective search space used: 599196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_p12.g1 MSMg01no501_p12.g1 CHROMAT_FILE:
MSMg01no501_p12.g1 PHD_FILE: MSMg01no501_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:53 2005
(246 letters)
>mm_chr1_186070740_186071385
Length = 646
Score = 439 bits (227), Expect = e-128
Identities = 242/247 (97%), Gaps = 2/247 (0%)
Strand = Plus / Minus
Query: 1 aatattattagtgccagaaaaatttacactgacagcatctctcccacaatccagtgttat 60
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 446 aatattattagtgccagaaaaatttacactgacagcaactctcccagaatccagtgttat 387
Query: 61 catgaattttgtgatttaactctttgattcctcacttgctaaagccaacaaagtccttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 catgaattttgtgatttaactctttgattcctcacttgctaaagccaacaaagtccttat 327
Query: 121 ttcagggcttctcaatgctcactgttccctgtgaaagcttccctgtgtcctgaaattctt 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttcagggcttctcaatgctcactattccctgtgaaagcttccctgtgtcctgaaattctt 267
Query: 181 accttgaggccctctcctctacacatttgccaggaattag-tttttttttaaattattta 239
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 266 accttgaggccctctcctctacacatttgccaggaattaggtttttttttaa-ttattta 208
Query: 240 cttttat 246
|||||||
Sbjct: 207 cttttat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
