Query= MSMg01no501_p13.b1 MSMg01no501_p13.b1 CHROMAT_FILE:
MSMg01no501_p13.b1 PHD_FILE: MSMg01no501_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:53 2005
(610 letters)
>mm_chr1_107109508_107110518
Length = 1011
Score = 1112 bits (575), Expect = 0.0
Identities = 602/613 (98%), Gaps = 5/613 (0%)
Strand = Plus / Minus
Query: 1 aatagagagcgaccatttctctttcttgaccagaaatgagatgaaaggaaactaaaacct 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 680 aatagagagcgaccatttctctttcttgaccagaaacgagatgaaaggaaactaaaacct 621
Query: 61 atggtctgcagcaatcctgttgtaggcgaccagcagtctaaagttaggttttgtcactct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 620 atggtctgcagcaatcctgttgtaggcgaccagcagtctaaagttaggttttgtcgctct 561
Query: 121 atatcgttaattttagaaacagctaatctcttaggacccctcagccaggacaggttatga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 560 atatcgttaattttagaaacagctaatctcttaggacccctcagccaggacagggaatga 501
Query: 181 agaaggcagcaaactacctcagttatagtgcatacagctgcatgcttccttcttagtctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agaaggcagcaaactacctcagttatagtgcatacagctgcatgcttccttcttagtctt 441
Query: 241 ---tcnattaaataatgcctgataaattatataatttctgaaaagtccttgaagacacca 297
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccct--actaaataatgcctgataaattatataatttctgaaaagtccttgaagacacca 383
Query: 298 ggagaaagatcttgtttaaatgaattataactcaatcaaagactttaaatggtccatatc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggagaaagatcttgtttaaatgaattataactcaatcaaagactttaaatggtccatatc 323
Query: 358 tttccagtgtctgccttgcttctccctgggcatgtttccttgaagagttatgtgaagcct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttccagtgtctgccttgcttctccctgggcatgtttccttgaagagttatgtgaagcct 263
Query: 418 ttaatggcacaacagtataaaaaggacacttcaataaactctagaatcgtttatttatgt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttaatggcacaacagtataaaaaggacacttcaataaactctagaatcgtttatttatgt 203
Query: 478 agtcagtcaacaaacatttactgaatctcacttagatgcagccactatgttaggggatgg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agtcagtcaacaaacatttactgaatctcacttagatgcagccactatgttaggggatgg 143
Query: 538 ctgttaggctgtcaagcgattcccaggctcataggtccctgtagtagtgtttcagcacta 597
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 142 ctgttaggctgtcaagcgattcccagactcataggtccctgtagtagtgtttcagcacta 83
Query: 598 aaagtcacattca 610
|||||||||||||
Sbjct: 82 aaagtcacattca 70
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1011
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1001
Effective search space: 600600
Effective search space used: 600600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_p13.g1 MSMg01no501_p13.g1 CHROMAT_FILE:
MSMg01no501_p13.g1 PHD_FILE: MSMg01no501_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:53 2005
(289 letters)
>mm_chr1_106991012_106991701
Length = 690
Score = 547 bits (283), Expect = e-160
Identities = 286/287 (99%), Gaps = 1/287 (0%)
Strand = Plus / Plus
Query: 1 gcagtgagtaggagttagtatgtgggccttggttggcac-tctaccttcctctttgcacc 59
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 gcagtgagtaggagttagtatgtgggccttggttggcacctctaccttcctctttgcacc 260
Query: 60 tcactcaagccagcttgatatgtcgcctttcctgacttgggaagggttatttaaagtctc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcactcaagccagcttgatatgtcgcctttcctgacttgggaagggttatttaaagtctc 320
Query: 120 cctaaaggtcaccaggcctgcatgacttctcacacttcctaaaaactgcacagcccaaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctaaaggtcaccaggcctgcatgacttctcacacttcctaaaaactgcacagcccaaat 380
Query: 180 ggtgcaaatttcaggctatagagctttgcattctttatgtgccaggagaggtagaattca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgcaaatttcaggctatagagctttgcattctttatgtgccaggagaggtagaattca 440
Query: 240 catcagcgtacagcaaacaaatggcacttgggaatcttccaggctta 286
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcagcgtacagcaaacaaatggcacttgggaatcttccaggctta 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space: 190680
Effective search space used: 190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
