Query= MSMg01no502_a24.b1 MSMg01no502_a24.b1 CHROMAT_FILE:
MSMg01no502_a24.b1 PHD_FILE: MSMg01no502_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:00 2005
(451 letters)
>mm_chr1_46511121_46511971
Length = 851
Score = 843 bits (436), Expect = 0.0
Identities = 445/448 (99%)
Strand = Plus / Plus
Query: 1 accttcctatagtttctgggatttaattttaaatagagtttcagtaaagaccagttttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accttcctatagtttctgggatttaattttaaatagagtttcagtaaagaccagttttgt 260
Query: 61 tgttttttaaagatgaagttttatggaatattttttcttgccacattgaaacagaaatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttttttaaagatgaagttttatggaatattttttcttgccacattgaaacagaaatga 320
Query: 121 ataaaatcataagaaaatcttagcaaattatacaaaacattgttattaatcaaagagctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaaatcataagaaaatcttagcaaattatacaaaacattgttattaatcaaagagctt 380
Query: 181 ttgaattacaaaggaatgaaaagttgagaaggaaatttaaaaatgaaacgaaattgggaa 240
|||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct: 381 ttgaattacaaaggaatgaaaagttgagaaagaaatttaaaaacgaaatgaaattgggaa 440
Query: 241 gataatagtccagaatgtgctgactaagtacttggaaaggtcatagagcagtcaatgaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gataatagtccagaatgtgctgactaagtacttggaaaggtcatagagcagtcaatgaca 500
Query: 301 aagtagaaagaaggctgcggttaaacccaactgcatttcaacaagtaagaccccaaggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtagaaagaaggctgcggttaaacccaactgcatttcaacaagtaagaccccaaggag 560
Query: 361 gctaggaaagaagagagaacaaccaaagaacaacaacaaatggtcactgaaaaatcatcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctaggaaagaagagagaacaaccaaagaacaacaacaaatggtcactgaaaaatcatcc 620
Query: 421 ctggttgatctgagaaacaaacaaaaaa 448
||||||||||||||||||||||||||||
Sbjct: 621 ctggttgatctgagaaacaaacaaaaaa 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_a24.g1 MSMg01no502_a24.g1 CHROMAT_FILE:
MSMg01no502_a24.g1 PHD_FILE: MSMg01no502_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:00 2005
(557 letters)
>mm_chr1_46668317_46669276
Length = 960
Score = 1036 bits (536), Expect = 0.0
Identities = 553/560 (98%), Gaps = 3/560 (0%)
Strand = Plus / Minus
Query: 1 tatcctgatttctggtcaatatggagaatccagctgactctatgaacacctacccttact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tatcctgatttctggtcaatatggagaatccagctgactctatgaacacctacccttact 701
Query: 61 agaagagtatagaaaatcacatggaagaaaataattttgaaatccacagccatcatttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 agaagagtatagaaaatcacatggaagaaaataattttgaaatccacagccatcatttaa 641
Query: 121 agaataaatggtgttaccgatagggggatacattgtttgaggaatggttatgtgcaaatc 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 agaataaatggtgttaccaatagggggatacattgtttgaggaatggttatgtgcaaatc 581
Query: 181 tgcagagatatatattattttgttgaatacaaataaaaagaaatatacttttggcagcac 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 580 tgcagagatatatattattttgttgaatacaaataaaaaaaaatatacttttggcagcac 521
Query: 241 agatatgaaaccattagaattgagcaagaaggggaagtgggatacatttacctctttgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agatatgaaaccattagaattgagcaagaaggggaagtgggatacatttacctctttgaa 461
Query: 301 cctattatggaagcttgaaatgctgctttgtctctagtggacatcacatttcctccagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cctattatggaagcttgaaatgctgctttgtctctagtggacatcacatttcctccagca 401
Query: 361 cacaccagagagtcaaggaggttaatcagagaagggaaaaggaagctcagaagctcacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cacaccagagagtcaaggaggttaatcagagaagggaaaaggaagctcagaagctcacca 341
Query: 421 ctcatggcagtcagtggaataaggctgcattgctcctcaatacgaggatgggtcaaattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ctcatggcagtcagtggaataaggctgcattgctcctcaatacgaggatgggtcaaattt 281
Query: 481 ccatttctcattacatatgagccaaaacacagaaaaaaaacc---ttttttttttttttg 537
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 280 ccatttctcattacatatgagccaaaacacagaaaaaaaacctttttttttttttttttg 221
Query: 538 cttttttggttttggttttg 557
|||||||| ||||| |||||
Sbjct: 220 cttttttgtttttgtttttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 960
Length adjustment: 10
Effective length of query: 547
Effective length of database: 950
Effective search space: 519650
Effective search space used: 519650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
