Query= MSMg01no502_c23.b1 MSMg01no502_c23.b1 CHROMAT_FILE:
MSMg01no502_c23.b1 PHD_FILE: MSMg01no502_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:09 2005
(572 letters)
>mm_chr1_88390173_88391140
Length = 968
Score = 992 bits (513), Expect = 0.0
Identities = 555/575 (96%), Gaps = 13/575 (2%)
Strand = Plus / Plus
Query: 6 gaattcacagccttgctcatgctagagattcagttactctggtactaagctgtaccccgc 65
|||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 206 gaattcacagccttgcacatgctagacattcggttactctggtactaagctgtaccccgc 265
Query: 66 tccccatcttcctccccctaaaatgcttttagtaggagcttagctcacaaccatgtctac 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tccccatcttcctccccctaaaatgcttttagtaggagcttagctcacaaccatgtctac 325
Query: 126 ccggtttgatctcagtg-ctatttgtaactgcagcagaaacatgatccaggaccaggaag 184
||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccg----gatctcagtgac-atttgtaactgcagcagaaacatgatccaggaccaggaag 380
Query: 185 cttttgccctccagccagccaggctggtacctaagcctcactctggctgtccctcccaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttgccctccagccagccaggctggtacctaagcctcactctggctgtccctcccaac 440
Query: 245 caacacccctgggattctcatcccctctgctctcccctagacctgaaaatcacctcctgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacacccctgggattctcatcccctctgctctcccctagacctgaaaatcacctcctgc 500
Query: 305 ctgagctttcccagggcctatcccagctagtttcatcccaagtctgagaaagggcaagtc 364
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 501 ctgagctttcccagggcctatcccagctagtttcatcccaagtctgagaatgggcaagac 560
Query: 365 cagcagttagatccccacagctgtgtgttagatcttaaactgaggtgtctattttacata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagcagttagatccccacagctgtgtgttagatcttaaactgaggtgtctattttacata 620
Query: 425 tcaatgtggacctggctgcctggttctcccagcatctctcagaacctggctgatgcaccc 484
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaaagtggacctggctgcctggttctcccagcatctctcagaacctggctgatgcaccc 680
Query: 485 cactccacctgcgccctgaactctccagcatgggccccgttcccc-------tgtccttt 537
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 caccccacctgcgccctgaactctccagcatgggccccgttccccagctacctgtccttt 740
Query: 538 ttatctcttagtctcttggccactgctctttgttc 572
|||||||||||||||||||||||||||||||||||
Sbjct: 741 ttatctcttagtctcttggccactgctctttgttc 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 968
Length adjustment: 10
Effective length of query: 562
Effective length of database: 958
Effective search space: 538396
Effective search space used: 538396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_c23.g1 MSMg01no502_c23.g1 CHROMAT_FILE:
MSMg01no502_c23.g1 PHD_FILE: MSMg01no502_c23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:09 2005
(517 letters)
>mm_chr1_88593629_88594546
Length = 918
Score = 735 bits (380), Expect = 0.0
Identities = 397/404 (98%), Gaps = 5/404 (1%)
Strand = Plus / Minus
Query: 117 tgtgcaggcttgataaaaacataatgaccaaatctttaaatgtcttact--ggggggggg 174
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 918 tgtgcaggcttgataaaaacataatgaccaaatcttaaaatgtcttactggggggggggg 859
Query: 175 ggctacaagatggcatgatggattaaagcattttccaccaagcctgacagcctgagttta 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ggctacaagatggcatgatggattaaagcattttccaccaagcctgacagcctgagttta 799
Query: 235 attatcaggatccacatggtagagagaaccagttactacaagttatcctatgacaggcat 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 attatcaggatccacatggtagagagaaccagttactacaagttatcctatgacaggcat 739
Query: 295 gcatgtacaacacacacacacacaagtgtaatttaatttctttttactgagaaaatgttt 354
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 738 gcatgtgcaacacacacacaca--agtgtaatttaatttctttttactgagaaaatgttt 681
Query: 355 catagcaaaccaagatagtctgattaaggaggatttgtagaagtaagtcttcaaaa-ctt 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 680 catagcaaaccaagatagtctgattaaggaggatttgtagaagtaagtcttcaaaaactt 621
Query: 414 aaatctatgtataagagagaaaaatgccgttgagctaaaatatgtgtgaggattgagcaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaatctatgtataagagagaaaaatgccgttgagctaaaatatgtgtgaggattgagcaa 561
Query: 474 gggatgttttagttgagataattggagagactggataaagctcc 517
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gggatgttttagttgagataattggagagactggataaagctcc 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 918
Length adjustment: 10
Effective length of query: 507
Effective length of database: 908
Effective search space: 460356
Effective search space used: 460356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
