Query= MSMg01no502_f10.b1 MSMg01no502_f10.b1 CHROMAT_FILE:
MSMg01no502_f10.b1 PHD_FILE: MSMg01no502_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:21 2005
(562 letters)
>mm_chr1_191928966_191929927
Length = 962
Score = 942 bits (487), Expect = 0.0
Identities = 555/593 (93%), Gaps = 31/593 (5%)
Strand = Plus / Plus
Query: 1 tggaggtataactcctagtagaccataccagcatgtctgtgattccaaagcaatatctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tggaggtataactcctagtagaccataccagcatgtctgtgattccaaagcaatatctcc 259
Query: 61 tctcctttgtttttgtctttaaa-ttatttatttatttatttatttatttatttatttat 119
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 260 tctcctttgtttttgtctttaaatttatttatttatttatttatttatttatttatttat 319
Query: 120 ttatttatttatttcagacacaccagaagagggcatcatatcccactacagatggtcgtg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 320 ttatttatttatttcagacacaccagaagagggcatcatatcccactacagatggtcatg 379
Query: 180 agccattacatgtggttgctgggagttgaactcaggacctctggaagagcagttggtgct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agccattacatgtggttgctgggagttgaactcaggacctctggaagagcagttggtgct 439
Query: 240 cttaaccttttagtcatctcttcagccctctcctctcctttgttaacctattcaggtctg 299
||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttaaccactgagccatctcttcagccctctcctctcctttgttaacctattcaggtctg 499
Query: 300 cttgtctgttggaaaacttggttataaatttatattcagaagaagtttatagtggttgct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cttgtctgttggaaaacttggttataaatttatattcagaagaagtttatagtggttgct 559
Query: 360 atgattatcagatttttaaaaacgcctcatcaaacaaggtctcttcacagagatttcttg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgattatcagatttttaaaaacgcctcatcaaacaaggtctcttcacagagatttcttg 619
Query: 420 atttttggcccctcttatctttctcctgtttgagcctccctctttctccctctctccctc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atttttggcccctcttatctttctcctgtttgagcctccctctttctccctctctccctc 679
Query: 480 ttcctccctccctctctccctcc---------------tccctcct---ct-----tctc 516
||||||||||||||||||||||| |||||||| || ||||
Sbjct: 680 ttcctccctccctctctccctccctccatgtctctctctccctccttccctccatgtctc 739
Query: 517 tctctctc----tc-tctctc-tct-ctctctctctctctctctctctctctc 562
|| ||||| || || ||| ||| |||||||||||||||||||||||||||
Sbjct: 740 tccctctccccctcctccctcctcttctctctctctctctctctctctctctc 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 96
Number of extensions: 39
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_f10.g1 MSMg01no502_f10.g1 CHROMAT_FILE:
MSMg01no502_f10.g1 PHD_FILE: MSMg01no502_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:21 2005
(224 letters)
>mm_chr1_192105375_192105998
Length = 624
Score = 389 bits (201), Expect = e-113
Identities = 222/235 (94%), Gaps = 12/235 (5%)
Strand = Plus / Minus
Query: 1 caattgagaaaccttgccttaatgaataaggtgggagagcaggatgtttccctcatcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 caattgagaaaccttgccttaatgaataaggtgggagagcaggatgtttccctcatcagc 268
Query: 61 atccagcctgcacaagcttgtggatgcacatgcgcacacacatacataaatatgaatatg 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 267 atccagcctgcacaagcttgtggatgcacatgtgcacacacatacataaatatgaatatg 208
Query: 121 cacaagtacacaccacacatactctctctctctctt-tctctctctctctctctctctct 179
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 207 cacaagtacacaccacacatactctctctctct-ttctctctctctctctctctctctct 149
Query: 180 ctctctctctctctctct----------ctctctctcacacacacacacacacac 224
|||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 148 ctctctctctctctctctttctctctctctctctctcacacacacacacacacac 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 21
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space: 132225
Effective search space used: 132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
