BAC Information

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BAC

Clone NameMSMg01-502H05
Chromosome1 (Build37)
Map Location 20,818,468 - 20,818,703
singlet/doubletsinglet
Overlap genenone
Upstream genePkhd1, Il17a, Il17f, Mcm3
Downstream genePaqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502H05.T7 (MSMg01no502_h05.b1)MSMg01-502H05.TJ (MSMg01no502_h05.g1)
ACCAG577802AG577803
length742750
length of high quality
(start - end)
240 (325 - 564)223 (328 - 550)
definitionCHROMAT_FILE: MSMg01no502_h05.b1 PHD_FILE: MSMg01no502_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:29 2005CHROMAT_FILE: MSMg01no502_h05.g1 PHD_FILE: MSMg01no502_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGAGCAAATCCGCGGA
ATTCTTGGAGATCTAAAAATTCAAACTGTAACACAGTGAAATGAAAACTC
CCCTTTGTCCCTACTCCAACTCTACCCTCCAGTAACTACTGTTCTACTAC
ACATACACGTATTTATGTATAGTCTATATGTCATCTACAATTGTTTCATA
ATTTTCCCTGGAAGACATTGACAAATGTCATTTTTACCACAGAGGCATTG
TATAAAATTAATGAGGCCACACAAATCAAGCTTAGTGAGCCAATGAGGTC
TGTTATTTTTGGGGGTTGGTGAGTGGAGACATGGGGTTATTTATAGAGCA
CAACCTCTGGGTTATTTATAGGAGTGTGGGTAACCTCAAGCACTGGCATC
TACACAAAGTTCCATCTCATCGTGAAGGACAACCTCATGGAAGGTGCATC
ATAGAATTGTACCTTGAATTAATCTTCTAGCAGACACAGTCTTGTATCCA
TCTGGTCTACCTATTGTTTGACAAGGCACAGTCTATCATGGCTGACAAGG
CAAGGCCGCTGAAGCCACAGGGTCTGTGTGTGTTGGTGAAGCTTGAAGTA
TGGTTTGGGCACAGCTTGTTAGATCTGGAAGTTCACGTCAGTCACATACA
TCCTCTTGGTTTACCCCAGTGACTCTCTTTCTCTAACTATGTTCCAATAC
TAAATATTTGTCCCATGTGGACAACACCTCTTACTTACTGTG
CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCTACAAAATTCTTTTGTCTACACCTCACATGTTCCC
ATAGGAGCCAAGGATTACAGACCTGTGTTACTGCACAAGTTTTTTTATGT
GGGTTCCGGCAATCCATATCCAAGCTATCTGGCTTGCCAAGTCACGGTAA
TTCCCAATGTTGATAAGCCTGCTGGCCAACAGGCAACTCTCAAACAGTCA
ATGTGTGATGCTGAGTCCTGCATCTGCTATGGATATCACACTTCAATACA
CAACATTATCATCCCAGATTAGATTCCTTTCTGCATGGATCCTTGCACTT
GTAATTAAAGAAACAGTGTTTTAAGCCGGGCGTGGTGGCGCACACCTTTA
ATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCA
GCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAAC
CCTGTCTCAAAAAAAAGAAAAACAAACAAACAAACAAAAACAAAAACAAA
AACAAAAACAAAAGAAAGAAAGAAATGGTGTTTTAAATTTGTTGGACATA
AGTGGTCCAAGCTGGTCTTAAATTCTGAGATTCTACTTCAGTCTTTCAGG
CATCAAGATTATGGGCATAAATCACCATAGCAGGATTCAAATTTTTCTCT
ATTTTTTCCCTTTATTTTGCCGGTTTGCTTGCTTGGCTTTTGGGTTTTGG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_h05.b1 MSMg01no502_h05.b1 CHROMAT_FILE:
MSMg01no502_h05.b1 PHD_FILE: MSMg01no502_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:29 2005
         (240 letters)



>mm_chr1_20818264_20818903
          Length = 640

 Score =  426 bits (220), Expect = e-124
 Identities = 232/236 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   acatggggttatttatagagcacaacctctgggttatttataggagtgtgggtaacctca 64
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 440 acatggggttatttatagagcacaacctcggggttatttataggagtgtgggtaacctca 381

                                                                       
Query: 65  agcactggcatctacacaaagttccatctcatcgtgaaggacaacctcatggaaggtgca 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 380 agcactggcatctacacaaagttccatctcatcatgaaggacaacctcatggaaggtgca 321

                                                                       
Query: 125 tcatagaattgtaccttgaattaatcttctagcagacacagtcttgtatccatctggtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcatagaattgtaccttgaattaatcttctagcagacacagtcttgtatccatctggtct 261

                                                                   
Query: 185 acctattgtttgacaaggcacagtctatcatggctgacaaggcaaggccgctgaag 240
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acctactgttttacaaggcacagtctatcatggctgacaaggcaaggccgctgaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)