BAC Information

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BAC

Clone NameMSMg01-502H14
Chromosome1 (Build37)
Map Location 120,652,591 - 120,653,246
singlet/doubletsinglet
Overlap genenone
Upstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1, Tcfcp2l1, LOC100041753
Downstream geneGli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502H14.T7 (MSMg01no502_h14.b1)MSMg01-502H14.TJ (MSMg01no502_h14.g1)
ACCAG577820AG577821
length744756
length of high quality
(start - end)
289 (315 - 603)667 (73 - 739)
definitionCHROMAT_FILE: MSMg01no502_h14.b1 PHD_FILE: MSMg01no502_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:31 2005CHROMAT_FILE: MSMg01no502_h14.g1 PHD_FILE: MSMg01no502_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTAGGG
TTCACACGAAGAACGCAGGTACTTGTGTTTTTAAGTCATATACTTTATCA
CCTATGCATGACCCAGTCCTGTTCTCTGAGTGCAACTTCTAGATTAGCTA
ACTCTCAGAAAGAGTCAAGCCCAGGGTTTCACCTTTTTGTGAGTGTCCTA
ACTTTCATGATGGGACATGATGTCCTAACAGTTCTTCCACAGTATAGCAA
GTGTCAGGATTCCTTTCATTCATAAGACTGAATAACACCTGCACGGACCC
CAGTCTATCTGTTGCACAAAGGATGTTGAGTGCTCAGTTTTGAGAAGCTG
GGATAGAAGAATTGTGAGTTCAAACCCAGCCAGAGCTATGCCTGGGACCC
CATAGGATGGAAGGTGAGTACTGACTTTTAAAAGTTATCGTCTGCCAGGC
GGTGGTGGTGCATGCCTTTAATTCCAGCACTCAGGAGGCAGAGGCAGGCG
GATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAA
CCAGGGCTACACAGAGAAACCCTGTCTCAGAAAAAAAAAAAAAAAAAGTT
ATCGTCTGAGCTTCTCACACACACACACACTAAATAAAAATCTTAAAAAC
AGTCTTAAGCATAAGCAAACTCCCAGCCAATTCTTTTGTCTCTGGCCCTC
ATCTTCCACAGCACAGCCGGGCTCACAGACACAGACACTGACTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCAAGTTTCCTCCTCCACAAGTACGGAA
AGCCTGAGGGAGACGATTAGAGTAAGAAATGGAAGTGAGACCACACAAGC
ACCCAGGGCATCTGTCACAGTGGAGCAGGGCATTCTGCTCTCTCTCTATG
GGGCCAGGTTTTTATAACTGGGATAATAACTGGGGCTAGGATGAGGGTAG
AGAGCACAGGCTAGGGTGCCCTCCCCCCACTTCAGTAGCAGCCAGCCAGC
TTAGCCCCTGGATTTTTTTTAAACCCTGGCCAGGGTTTGCTCTGGGGGAG
ACTACAGCTCTGAGGGAAGTGATTTGAAAATCAAATGGGCTTGCTGGAAC
ATTCCATTCCTGAGCGGAGCAGTTTCCAGCACTTAAATGAGCTGTGCGAG
CATAATGGCCTTGGGAGCCAGGTTATCGCGGGGCCTTTGCAGGGATCTGC
CTAACATTCCCCTGGTACCCTAGGGAGATGACAGGGCCAGCAAGATGGCT
CAGAAGGTAATGGCATTGTTGCCATGCCTAAGAACCTCAGTCCAATTTCT
AGGTCCCAGATGGTAGAAGGAGAGGGTCAGTTCCCACAAGTTGTCCTCTG
ACCTCCACATGCACACCAAGGAAAGACTGAGACCACACAGCACACACACT
ATCACATCCACCATACATATATACACACACCATATACATATACACACCCC
ACATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_h14.g1 MSMg01no502_h14.g1 CHROMAT_FILE:
MSMg01no502_h14.g1 PHD_FILE: MSMg01no502_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:31 2005
         (667 letters)



>mm_chr1_120652591_120653654
          Length = 1064

 Score = 1093 bits (565), Expect = 0.0
 Identities = 636/675 (94%), Gaps = 30/675 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaagtttcctcctccacaagtacggaaagcctgagggagacgattagagtaagaaatgg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 656 ccaagtttcctcctccacaagtacggaaagcccgagggagacgattagagtaagaaatgc 597

                                                                       
Query: 61  aagtgagaccacacaagcacccagggcatctgtcacagtggagcagggcattctgctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||
Sbjct: 596 aagtgagaccacacaagcacccagggcatctgtcacagtggagcagggcgttctg--ctc 539

                                                                       
Query: 121 tctctatggggccaggtttttataactgggataataactggggctaggatgagggtagag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 538 tctctatggggccaggtttttataactgggataataactggggctaggatgagggtaggg 479

                                                                       
Query: 181 agcacaggctagggtgccctccccccacttcagtagcagccagccagcttagcccctgga 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agcacaggctagggtgcccttcccccacttcagtagcagccagccagcttagcccctgga 419

                                                                       
Query: 241 tttttttt----aaaccctggccagggtttgctctgggggagactacagctctgagggaa 296
                |||    ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 -----tttgaggaaaccctggccagggtttgctctgggggagactacagctctgagggaa 364

                                                                       
Query: 297 gtgatttgaaaatcaaatgggcttgctggaacattccattcctgagcggagcagtttcca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtgatttgaaaatcaaatgggcttgctggaacattccattcctgagcggagcagtttcca 304

                                                                       
Query: 357 gcacttaaatgagctgtgcgagcataatggccttgggagccaggttatcgcggggccttt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 303 gcacttaaatgagctgtgcgagcataatggccttgggagccaggttatctcggggccttt 244

                                                                       
Query: 417 gcagggatctgcctaacattcccctggtaccctagggagatgacagggccagcaagatgg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gcagggatctgcctaacattcccctggtaccctagggagatgacagggccagcaagatgg 184

                                                                       
Query: 477 ctcagaaggtaatggcattgttgccatgcctaagaacctcagtccaatttct-aggtccc 535
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 183 ctcagaaggtaatggcattgttgccatgcctaagaacctcagtccaatt-cttaggtccc 125

                                                                       
Query: 536 agatggtagaaggagagggtcagttcccacaagttgtcctctgacctccacatgcacacc 595
           |||           ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 124 aga-----------gagggtcagttcccacaagttgtcctctgacatccacatgcacacc 76

                                                                       
Query: 596 aaggaaagactgagaccacacagcacacacac------tatcacatccaccatacatata 649
           || | |||||||||||||||||||||||||||      ||||||||||||||||||||||
Sbjct: 75  aaagcaagactgagaccacacagcacacacacacacactatcacatccaccatacatata 16

                          
Query: 650 tacacacaccatata 664
           |||||||||||||||
Sbjct: 15  tacacacaccatata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1064
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1054
Effective search space:   692478
Effective search space used:   692478
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)