TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAAATCCGCGGAA
TTCCCTGGGCTTACAGAAAATAATGGCACTGGGTAAAGTTTCTTGAGTAG
GAAATGAAGACAATAGAGCAAGTGGCTCTGTTTGGAATAATGAGTGGTGC
CTTTGAAGACGAGATATGCCTGTGCAGGTGTGTTATCAGACTTCAGCCTT
TCCCCAGAGATAGGCAACGAAATTATTTATTTCGTTGGGGGTTCAGGCTT
TAGGCGGACAAGGAAGTATCAGAGCAGTTTCTCCCACCACATATTGCTGT
GCTCTCTTGTTTTCTTGTTTTTGTAGAGTGTAGTTTGAAATGACAGTCCT
TGGATTATTAGTAAATTTCCCTCCACCTGGGGAAATGAGTCCTGCCTTTC
AAGCCCCCATAGTTGCAGATTCTAAATCCTATTATTAGGAGCATTCAGGG
AACAAATTTTTACAATACAGAAATAGGGGATGCTGGTTACAGTTTCTCCA
TCTCCACTTTCTTTTTTCTTTCTTTCTTTTTTTTTGATTTATTTACTTAT
TAATATGTAAGTACACTGTAGCTAACTTCAGACACTCCAGAAAAGGGTGT
CAGATCTCGTTTATGCATGGTTGTGAGCCACCATATGGTTGCTGGGATTT
TTTTTTTGACCTTTTGGAAGACCAGCTTTGCTCTTACCCGTTGAGTCATC
TTTTCAGCCCCTATCTCCACTTTCTTAATACCTTCTTTATATGGAGCATG
ATTTGTTCTTGAGT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAAAATGCTCCCCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCCG
TCTGGCGGTTCCTCATATTTTTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATATGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGGAATTCACACAATATGTACTCACTGATAAGTGGA
TATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAA
CACATGANACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCT
CCTTAGAAGTGGGAACA

Query= MSMg01no502_o17.b1 MSMg01no502_o17.b1 CHROMAT_FILE:
MSMg01no502_o17.b1 PHD_FILE: MSMg01no502_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:04 2005
         (573 letters)



>mm_chr1_79765929_79766901
          Length = 973

 Score =  853 bits (441), Expect = 0.0
 Identities = 540/589 (91%), Gaps = 27/589 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggcactgggtaaagtttcttgagtaggaaatgaagacaatagagcaagtggctctgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 atggcactgggtaaagtttcttgagtaggaaatgaagacaatagagcaagtggctctgtt 750

                                                                       
Query: 61  tggaataatgagtggtgcctttgaagacgagatatgcctgtgcaggtgtgttatcagact 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 749 tggaataatgagtggtgcctttgaagacgagacatgcctgtgcaggtgtgttatcagact 690

                                                                       
Query: 121 tcagcctttccccagagataggc----------------aacgaaattatttatttcgtt 164
           |||||||||||||||||||||||                || | ||||||||||||| ||
Sbjct: 689 tcagcctttccccagagataggcatttagtgaaaggccaaaggtaattatttatttcatt 630

                                                                       
Query: 165 gggggttcaggctttaggcggacaaggaagtatcagagcagtttctcccaccacatattg 224
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gggggttcaggctttaggcagacaaggaagtatcagagcagtttctcccaccacatattg 570

                                                                       
Query: 225 ctgtgctctcttgttttcttgtttttgtagagtgtagtttgaaatgacagtccttggatt 284
           |||| |||||||||||||||| |   |||||||||||||||| |||||||||||||||||
Sbjct: 569 ctgtcctctcttgttttcttggtagggtagagtgtagtttgagatgacagtccttggatt 510

                                                                       
Query: 285 attagtaaatttccctccacctggggaaatgagtcctgcctttcaagcccccatagttgc 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 attagtaaatttccctccacctggggaaatgagtcctgcctttcaagcccccatagttgc 450

                                                                       
Query: 345 agattctaaatcctattattaggagcattcagggaacaaatttttacaatacagaaatag 404
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 449 agattctaaatcctattattaggagcattcagggaacaaatttttaaaatatagaaatag 390

                                                                       
Query: 405 gggatgctggttacagtttctccatctccactttcttttttctttctttctttttttttg 464
           |||||| |||||||||| |||||||||||||||||||||||          |||||||||
Sbjct: 389 gggatgttggttacagtgtctccatctccactttctttttt----------ttttttttg 340

                                                                       
Query: 465 atttatttacttattaatatgtaagtacactgtagctaacttcagacactccagaaaagg 524
           ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 339 atttatttatttattaatatgtaagtacactgtagctgacttcagacactccagaaaagg 280

                                                            
Query: 525 gtgtcagatctcgtttatgcatggttgtgagccaccatatggttgctgg 573
           | |||||||||| || | | ||||||||| |||||||||||||||||||
Sbjct: 279 gcgtcagatctcatt-acggatggttgtgggccaccatatggttgctgg 232


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)