BAC Information

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BAC

Clone NameMSMg01-502P09
Chromosome1 (Build37)
Map Location 33,751,914 - 33,752,270
singlet/doubletsinglet
Overlap genenone
Upstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik
Downstream geneRab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502P09.T7 (MSMg01no502_p09.b1)MSMg01-502P09.TJ (MSMg01no502_p09.g1)
ACCAG578190AG578191
length742700
length of high quality
(start - end)
357 (321 - 677)126 (362 - 487)
definitionCHROMAT_FILE: MSMg01no502_p09.b1 PHD_FILE: MSMg01no502_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:07 2005CHROMAT_FILE: MSMg01no502_p09.g1 PHD_FILE: MSMg01no502_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCAAAACGGGGCGCGGAA
TTCTATGTTTACGAAGAGACGTGACTGATGCTTGGCCTCATGGCTTCCTT
TCTGTGTCCTTATGAGTATCAGCTCTTCCCTTCTGCATAGAACAGCAGTA
TGGCACAGTCAAGAGACTATGGTTCTGGTGGCAGACATACATAGCTATAC
TATGGGTTCAGCAGCAGTAATTCATTGAATACCTTCTGGGAAAGGTTAAA
TAGCGTACTTGTAAATCCCCATTTGCTAGTGGAAATGGGTCTCAAGAGTT
TCAGTTGGCTTACATTGGTTAATCAGCCCTGACCTGTGAATTATATGTCC
CCTTGCTGTGCTATCCTAAAGCAAGGTCTCACGAAACAGTCTCCCCTTTG
TATTCTGGACTTTAGTGGCATAAATATTTGACTAAAGGAGATTACTCCCT
TCAATTATCTCTATTCATTTCTAAAAGTTTCTTTAAACAATCTTTCTTTA
ATAGCTGTTCCAGGTTACTGTCCTGTCTTTTCTCTTCTGCCCCAGTTCCC
ACATATTTATCTTCTGTCTCAGACTCATGGCTTTGCCAAGGCTGAATCTT
CTCCAGTGACATGGCCCATCTGTAGAATACAACTAGTGCCAAGGGTGTGG
ACTTTTATGCTCCTTAAGGATCTGGTCCTTGGAAGCCAACCTTGTGACTC
ACGCTTGTGGGGTTAAAGGGAGAATGGCCATCTTGGCTCTGA
CCTGGCGGNCGCCGGGTAGCCATTTTTAGGNNGAACTANAGAATTATCCG
CACCAGGCNGNNNGGNNGGNNGGNNGGNNGGNNNNGNNGNNGNNGCTGCN
GCCGCNGCCGCCNANNNNNNGAGACAGAGNNNCNCGGGGNAACCCGGGAA
GGCCGAAAACNCACNCGGNAGACCAGGCGGGNCNCAAACNCAGAGANCNA
CGGGCCACGGCCNCCCAAGNACGGGAATTTTTTGAGNGGAGCACCACCGG
CACNAAGCAGGGCNCAGGGGGCTCACAGAGACNGAACAANAAGCTGTTTT
TTTTTAGCANGGGGCCCNGCAGGACNCCNAACAGNGGGTATGGGACGCCC
CCGGCNGGNGCACCAGCTCTTGGAAACCTTTACCTCCTACAGGGTTGCCT
TGCAATGAGGATTTGTGCCTGGTCTTATTGCTTCTTGTTGGTATCCCTGG
GGGCCCTGCTGTTACTGAAGGGAACTGAATGGGAAGACGAATGGGATATA
TTTAAAAAGTGGAGGGAGTGAATGCATTTTACAGAACATTGACTCATAGA
ATAATCGGATTCTATCCTCAGAGGTCACGATACCTCTTTTTTACTCAACA
ATACTCGCCGTGAAAAGATCCTTGATTTTTTTTTTATTGTTAAAAACTGA
TTATATTTAAAAGACTTCGTATTGCTTGACCATGTTTCCATAAATTACCA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_p09.b1 MSMg01no502_p09.b1 CHROMAT_FILE:
MSMg01no502_p09.b1 PHD_FILE: MSMg01no502_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:07 2005
         (357 letters)



>mm_chr1_33751714_33752470
          Length = 757

 Score =  690 bits (357), Expect = 0.0
 Identities = 357/357 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcagccctgacctgtgaattatatgtccccttgctgtgctatcctaaagcaaggtctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aatcagccctgacctgtgaattatatgtccccttgctgtgctatcctaaagcaaggtctc 498

                                                                       
Query: 61  acgaaacagtctcccctttgtattctggactttagtggcataaatatttgactaaaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acgaaacagtctcccctttgtattctggactttagtggcataaatatttgactaaaggag 438

                                                                       
Query: 121 attactcccttcaattatctctattcatttctaaaagtttctttaaacaatctttcttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 attactcccttcaattatctctattcatttctaaaagtttctttaaacaatctttcttta 378

                                                                       
Query: 181 atagctgttccaggttactgtcctgtcttttctcttctgccccagttcccacatatttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atagctgttccaggttactgtcctgtcttttctcttctgccccagttcccacatatttat 318

                                                                       
Query: 241 cttctgtctcagactcatggctttgccaaggctgaatcttctccagtgacatggcccatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttctgtctcagactcatggctttgccaaggctgaatcttctccagtgacatggcccatc 258

                                                                    
Query: 301 tgtagaatacaactagtgccaagggtgtggacttttatgctccttaaggatctggtc 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgtagaatacaactagtgccaagggtgtggacttttatgctccttaaggatctggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)