BAC Information

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BAC

Clone NameMSMg01-503B14
Chromosome1 (Build37)
Map Location 121,821,082 - 121,821,257
singlet/doubletsinglet
Overlap geneGm101
Upstream geneGli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177
Downstream geneSctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503B14.T7 (MSMg01no503_b14.b1)MSMg01-503B14.TJ (MSMg01no503_b14.g1)
ACCAG578296AG578297
length750757
length of high quality
(start - end)
199 (89 - 287)169 (60 - 228)
definitionCHROMAT_FILE: MSMg01no503_b14.b1 PHD_FILE: MSMg01no503_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:17 2005CHROMAT_FILE: MSMg01no503_b14.g1 PHD_FILE: MSMg01no503_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCCTTTTTANCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAC
CGACTCACGCGGAATCNGAATGGATGACTCAACCTCCTACGCTGGTCATC
CTTGCCACCCTACATCACCGTGAGGGTGACAAGAAACCAGTCACACAGAT
CCTACAAGATACAGTCAGCCATAGCTGTGCTTACATCCATGTGTATGCCC
GTGTGGATGTGTTGAGTGCATGTTTGCATGCATGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCATACACTCT
TTGTTCCATCTTTCTGCGGCAGTTTTTTTTTCTTTACCTGGAGCAAACTA
ACCCACCTCAATGTGACCAGCTTTTCCCACAAATTTTCCTGCTTTTGCTT
CTCCTAGTGCTGATCTTACACGTTATATCACTATTCTGCCACTACTTTTT
CCCTTTTTCTCCCCCTCCCCCCTTTCCTTTTCCATCTTTCTTTCTTTATT
GAGGTCCCCGGTCGCCCCGTTTTTCCCTTACCCCTTTTTTTTTTTCTTCC
CTTTCACCCCTTTCCCCACCCCCTCTTTTTTTTCAGCCTTCGTTTTCCCA
CCTTTTTTCTCTCCCCCCTCCTTTCTTTTTCCATTCTCCCTCTCCCATTT
TTTCTTTATTTTTTCCCCTTTACTCTTTCCCTCCCCTACCCTTTTTTTCC
TATCTTTTCCCTTCTTCATTTTTTTTTTTTTTCCCCTCCGTTTCTCGTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAG
AAATTCCAGACCAATCTGGACAACACAGCGAGATCCAGTCTCTAAAGTAT
AATTAATTAATCTTGTGTCTATCCATTCTTGTGACTGTGTATATGCAGAG
AACAACCTCAAAATTTTGTTCCTCAGGAGCCGTCCACTTTATTGTTGTTG
TTGGTGGTGGTAGTGGTGTGTGTGTGTTTTTTTTTTTNNNCTNNNTTTTT
TTTTTTTTTTTTTTTTTTTTCTTTNNTNNTNNNNNNTTTTTTTTTTTTTT
TTTTTNNNNNNNNNNNNNNNNNNNNNNTTNNNAAANTNTTTTTTTTCTCC
CCCTTTCNACCTTTTCTTATAAACAATTTCTTTTCTTACTCTCTTCTTTT
TGCCCTCTTTCCCCCCCCTTTTTTCTTTTTATTATTTCCTTTCCCACATC
ACTTTTTATAATATTCTCCATACCCCTTTTTTTATTTTTTTTTTTTCCCC
TCTTTCACTTTCATTCTTTCCCTCCTTTTTTGCACATTTTTCCTTTCCAC
TTTCTTTTTTTCATCAGTTTTTTTTGCTTCATTTATTCTTACAATAATTT
TTTTTTTTTTCCTTTCCTTTTTTTTTCTCTTTGTCCTTCTCCCTTCCACC
CATACCTTTTTTTTTTTTTCTTTTTTCCCTCAAATATCTTGTACTTCCTG
ATTTGGTGCTAATCCCTTATCTTTTTTTTTTCGTGCTCCATTCTATTTAC
CCCTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_b14.b1 MSMg01no503_b14.b1 CHROMAT_FILE:
MSMg01no503_b14.b1 PHD_FILE: MSMg01no503_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:17 2005
         (199 letters)



>mm_chr1_121820882_121821480
          Length = 599

 Score =  325 bits (168), Expect = 1e-93
 Identities = 174/176 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgctggtcatccttgccaccctacatcaccgtgagggtgacaagaaaccagtcacacag 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 acgctggtcatccttgccaccctacatcaccgtgagggtgaaaagaaaccagtcacacag 260

                                                                       
Query: 61  atcctacaagatacagtcagccatagctgtgcttacatccatgtgtatgcccgtgtggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctacaagatacagtcagccatagctgtgcttacatccatgtgtatgcccgtgtggat 320

                                                                   
Query: 121 gtgttgagtgcatgtttgcatgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 176
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttgagtgcatgtttgcgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)