BAC Information

Click to search

BAC

Clone NameMSMg01-503F23
Chromosome1 (Build37)
Map Location 163,414,956 - 163,415,616
singlet/doubletsinglet
Overlap genenone
Upstream geneRabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4
Downstream geneTnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703, Dnm3os
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503F23.T7 (MSMg01no503_f23.b1)MSMg01-503F23.TJ (MSMg01no503_f23.g1)
ACCAG578504AG578505
length710732
length of high quality
(start - end)		650 (61 - 710)500 (87 - 586)
definitionCHROMAT_FILE: MSMg01no503_f23.b1 PHD_FILE: MSMg01no503_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:37 2005CHROMAT_FILE: MSMg01no503_f23.g1 PHD_FILE: MSMg01no503_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGTGTGTCCTTTTNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTCCGAGGATCCGCGGAATTCATTTTGTTTTCCTGAATGGCTTGTACCT
CTTTGAGGGTGTAGCCTAAGAGTTATAACATTTTCACCATAATTTTTTGG
ACTATTTAGAATAATATCTTGGTCCTTAAAAAAATCTGAGGAAAATGAAT
GTTTAAATATATTGTCATTAAACTTAAATATATTCATACTTATCAATTAG
TAGAGTGTGTGTTATTGCAATACTTGCAAATTAAGTACTTAATTACTTAA
CAGAGTAGAAGCAGAATTTTAGGAATCCTAAATAGTTACATCTCTGTACC
CATAAATCCATCATTGGGAAGATGGAGAAGTTAAATCCTTTTCAGCCTTT
GCATTTTATGATAGGAAGACCTCAAAAGAGCATCCTAAGAATTCTGTCCT
ATACACCCACACTCCAGACTCAACAACTCTTCAGAGTTCTCAGTGTGGCT
GGTTTCTTCAGACAAGCGAATACAGACAGGAAATAAACACTTAGGAATCC
GGCTGCTTTATTGTTCATGTGCCATCACAGACTAATGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGGTAAGTGACCTGGCAAGTCCAATTGTAAG
TGCAGAAAAGCATGACAAATATTTCATTTTTGTGTATAGTTTTACAGTTT
ATAGCATTTA

GGGTTTTTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCTGAGTGGATC
CTGGCTTGGCATTAGCAAAGAATGGACTGGGATAGGTGTCCTCGCTGTGG
CCCTTGTTTTGGCATGCATGTTGTGTGTATGGTGTATGTGTCAGTTGCGG
AATGCCCAGGTCCACACTGCCGCCATGGTGGTGCAAGCTTTTGCCACAGT
GGAAGCAGGGAGTCACCTCAGATTTGGTTTGCTAGCATGAAGAGTGAACA
ATGAAGCCATCGCTCCATAGGGTTGTATGGCTAAGCACTGCACAGAGGTT
AGTCTGGAAGCTGTTTGACAATCTCTGGGAGGTATGTCTGATTGAATGAG
GATTGAGTGTCCTAGTGTCCTTCCCCCAGGAAAAATGGCACGGGAGCAGG
TCAGGGTTGCTCTGGGTAAAAAACCTGTGAGCCTAAGAGTCAATCCTGTA
CATGGCCCCTAATTCTGCATACTGGGGATCAGACCTCTATCTTCACCCAC
GGAGCTTGTTCAAAAAAATATTAAAGGGGGAATTGTAGGGAGCCATTCTG
GACTTCCTGGTCAGCANGATGGAAGTCTGCTCCAGGTAGTAAACAAGCCC
ATGTTTGGTGGATGGCCCGCCCTTAATCCCTGATTGGCTGAGCAAGCCTG
CCTGGTGAGGTGATGTGACCTGTGGTGATTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_f23.b1 MSMg01no503_f23.b1 CHROMAT_FILE:
MSMg01no503_f23.b1 PHD_FILE: MSMg01no503_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:37 2005
         (650 letters)



>mm_chr1_163414750_163415798
          Length = 1049

 Score = 1180 bits (610), Expect = 0.0
 Identities = 641/662 (96%), Gaps = 19/662 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcattttgttttcctgaatggcttgtacctctttgagggtgtagcctaagagttat 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcattttgttttcctgaatggcttgtacctctttgagggtgtagcctaagagttat 266

                                                                       
Query: 67  aacattttcaccataattttttggactatttagaataatatcttggtccttaaaaaaatc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 267 aacattttcaccataattttttggactatttagaataatatcttggtccttaaaaaa-tc 325

                                                                       
Query: 127 tgaggaaaatgaatgtttaaatatattgtcattaaacttaaatatattcatacttatcaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgaggaaaatgaatgtttaaatatattgtcattaaacttaaatatattcatacttatcaa 385

                                                                       
Query: 187 ttagtagagtgtgtgttattgcaatacttgcaaattaagtacttaattacttaacagagt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttagtagagtgtgtgttattgcaatacttgcaaattaagtacttaattacttaacagagt 445

                                                                       
Query: 247 agaagcagaattttaggaatcctaaatagttacatctctgtacccataaatccatcattg 306
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 446 agaagcagaattttaggaatcctaaatagttacgtctctgtacccataaatccatcattg 505

                                                                       
Query: 307 ggaagatggagaagttaaatccttttcagcctttgcattttatgataggaagacctcaaa 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggaagatggagaagttaaatccttttcagcctttgcattttatgataggaagacctcaaa 565

                                                                       
Query: 367 agagcatcctaagaattctgtcctatacacccacactccagactcaacaactcttcagag 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agagcatcctaagaattctgtcctatacacccacactccagactcaacaactcttcagag 625

                                                                       
Query: 427 ttctcagtgtggctggtttcttcagacaagcgaatacagacaggaaataaacacttagga 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttctcagtgtggctggtttcttcagacaagcgaatacagacaggaaataaacacttagga 685

                                                                       
Query: 487 atccggctgctttattgttcatgtgccatcacagacta----------atgtgtgtgtgt 536
           ||||||||||||||||||||||||||||||||||||||          ||||||||||||
Sbjct: 686 atccggctgctttattgttcatgtgccatcacagactagtgtgtgtgtatgtgtgtgtgt 745

                                                                       
Query: 537 gtgtgtgtgtgtgtgtgtgtgtgtg--------gtaagtgacctggcaagtccaattgta 588
           |||||||||||||||||||||||||        |||||||||||||||||||||||| ||
Sbjct: 746 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtaagtgacctggcaagtccaattata 805

                                                                       
Query: 589 agtgcagaaaagcatgacaaatatttcatttttgtgtatagttttacagtttatagcatt 648
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 agtgcagaaaagcatgacaaatatttcatttttgtgtatagttttacagtttatagcatt 865

             
Query: 649 ta 650
           ||
Sbjct: 866 ta 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1049
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1039
Effective search space:   664960
Effective search space used:   664960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |