BAC Information

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BAC

Clone NameMSMg01-503L04
Chromosome1 (Build37)
Map Location 147,280,788 - 147,281,079
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs21, Rgs18, LOC667877, LOC625057, LOC383570
Downstream geneLOC383571
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503L04.T7 (MSMg01no503_l04.b1)MSMg01-503L04.TJ (MSMg01no503_l04.g1)
ACCAG578753AG578754
length602714
length of high quality
(start - end)
76 (84 - 159)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no503_l04.b1 PHD_FILE: MSMg01no503_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:03 2005CHROMAT_FILE: MSMg01no503_l04.g1 PHD_FILE: MSMg01no503_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTCTCCCACTTTCTATATTGCGGCGCTAAACGACTCCTATTTTTCTA
CAACACGCGGATTCTTGCATTTTTTCCCAAAGCTTGCTCTGCTCTCAGAT
CAGGAAGGGACAGGATCACGTAACTGAATACATTATGTAAGTTCTGCAAG
CAACCAAACTAGATGTTTTTGACATACTTAAGCCTGAGATTAATTTTAAA
TCTTTAAAACTGTTTCCCCCAGAACCTACATTATTATTGGACTTAATTTT
ACCTTTCACTGGATGAATAATTACCAATCTTGGGAATATTTAAAGGTTAT
TTTCATCACTTCCCCCCTCTAAGGGCCTTTCCCTCTCTCTTTTTTATCTC
AAATTTTTTTAAATAAATAAAAGATNATACGGTGGGGATCCTTTTTTTTA
AAACGGTGTCCTCCTTTAATATTTTCCCCCCTTTCAAACGATTATCCCTT
CCCCTCTTTTTTATAAACCCTAAATATCCCCTCCTTTTTTTTTTGGGGGG
AGTTTTTTTTACTTCCCGCACCCCCTTTTTCCGGGGGGCGGCCAACCATC
CAACCCCCCCTTTTTTCTTTCTGCCTCTTTTTTTTTTTTTCCCCCAACAC
CC
CAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTTGAGTTTGAAGATGGTTTCC
TGTCTTCCTTTATTTTTAGCATGAAGTTTTCTTTTAATGTTCAGCTTTTT
GTTTTGATTTTAAATGGATATATACTATTAAGTGAATGAGACTCCACTGT
GATTCACTTGTTTATTTAATCCAAAAAATTCAGGGATGTCTGTAAATTGC
AGTTTTGCCCTTGTTGAGAAGTGTTGTTGGTTGACTTAAGGAGGGACCAG
ATATAATTTCTATTATTCCTGTACTGAAAGAAAAAATATTGATTTATACA
TTTTTTAAAAATCTAAATTTTGATGAAGGTCCCCTGCGAACTTTTAACTT
TAAATATATTTTAAATATAGTTTTTATTATTAGAAGAGTATTATAAATGA
ATGATCAATATCAAAAAGATTCACAAACAGCTTCATTTTAAAAAGCACAA
ATAGTTTCCAGTGTGAAATGCCCAAATCTCAATGTTTTTTGTAGTTGCTG
TACTAAATAATGCGATTCTTGAATTTAAAGATGTTTAAGCTGTCACTGTA
AGCTGAAGTACTTGTATCTGCCGCCCCTGGGATCTTCACTCATTCTACCC
CAGAAATCCCGATACTGTGATGTTAACATGTAGAACATATGCCAGTCTCG
GGGGCGGGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_l04.g1 MSMg01no503_l04.g1 CHROMAT_FILE:
MSMg01no503_l04.g1 PHD_FILE: MSMg01no503_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:03 2005
         (292 letters)



>mm_chr1_147280588_147281279
          Length = 692

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttgagtttgaagatggtttcctgtcttcctttatttttagcatgaagttttctttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttgagtttgaagatggtttcctgtcttcctttatttttagcatgaagttttctttta 260

                                                                       
Query: 61  atgttcagctttttgttttgattttaaatggatatatactattaagtgaatgagactcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttcagctttttgttttgattttaaatggatatatactattaagtgaatgagactcca 320

                                                                       
Query: 121 ctgtgattcacttgtttatttaatccaaaaaattcagggatgtctgtaaattgcagtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgattcacttgtttatttaatccaaaaaattcagggatgtctgtaaattgcagtttt 380

                                                                       
Query: 181 gcccttgttgagaagtgttgttggttgacttaaggagggaccagatataatttctattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccttgttgagaagtgttgttggttgacttaaggagggaccagatataatttctattat 440

                                                               
Query: 241 tcctgtactgaaagaaaaaatattgatttatacattttttaaaaatctaaat 292
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagtactgaaagaaaaaatattgatttatacattttttaaaaatctaaat 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)