BAC Information

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BAC

Clone NameMSMg01-503O09
Chromosome1 (Build37)
Map Location 171,617,523 - 171,617,753
singlet/doubletsinglet
Overlap geneRgs5
Upstream geneEG383613, Nuf2
Downstream geneRgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503O09.T7 (MSMg01no503_o09.b1)MSMg01-503O09.TJ (MSMg01no503_o09.g1)
ACCAG578906AG578907
length719714
length of high quality
(start - end)
58 (259 - 316)231 (87 - 317)
definitionCHROMAT_FILE: MSMg01no503_o09.b1 PHD_FILE: MSMg01no503_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:19 2005CHROMAT_FILE: MSMg01no503_o09.g1 PHD_FILE: MSMg01no503_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTGCTTTTCCCACAATTAGCGGCGTTGAAAGAATTACANCTTTCCCAG
CNCGCGGGAANNNNANANCTTACANNGAGGGGCGCGACGAACCCCANACG
CNNCCCGAAGCGCCACAGCNCCTTATACCAAANGAACAGAGGGNCNANAG
AACCNNCNCGGACNCATTCCTGCGACGNAGAANTCCCCGGGGGGGGGACA
GACCCCCCAGANAGCACAAGGAAATCTGGGAGCCCTTTTTTTCCACCAGG
ATTTTTTCCATCTGTATGAAAACAGATATAAAAACATACTTTTACATGTT
GATAGACTTTCTTGTGATCTTTTTTTTCAGGAAACAANCAGAAAAATGAA
GGAGCNGGCCGTCCCTGCAGGCCCTTTTGAGAATCCTGTGATTGCTAGCC
TCTGGTCAATCTCTGTCCCATTTTAACTCATACAGTACACACTGGGACAT
ATCCTCTGTTCTAGCTCAGATTGGGTCTTATCTTTAACTAAGTGGGGGAA
ATCTTGATTTTTATCATCTTGACAGCCTGAAGCTTCTTTGTTAAATTTTC
TCATGCTTTAGGACACTTTGTACGTATTACAAGTTTTCACGACCGACGAC
TTGTCCACGTTTTTTTCCTTCCTCTCCTTCCCTTTTTTTTTTTCCCCCTT
TTTTCCTTTTCTCCTTTTTTTTCCTTTTCCTCTCTCTTCTTTTTTCCCCT
CTTTTTGCCCTTTTCCTTC
TTTTTTCTTTCTATATATGTGTAGGCCTGGNGGCCGCCTGGTTTCCAAAA
ATGAGGGTGAACTATAGAAGTATCCAAAAAATTCACCAGAGAGATAAAAC
CAGTATTCAGGTCAAGGGTCTCTGCAATGGACAGCGGGTTCGTAAGTTCA
TTTCCTGCTGTAAAGTGAACGTTCACGACACTGAGGAATCCTGACAAGTG
TCCTCAGGTCTGAAATATCAGTGTTTGGGCGGACCGATCTTTATCTCAAA
ATTTTATGGAGAAGAGGAATAAGTGACTCAGAGTATCTGATAATAGGTAG
GCTGAGGGGCTGAGGGGTTTTTTTTTCCTGAGGCTCTGGGTGTTTGGGGC
TGAGCGTTTGCCACAGGCATAGTCTATGGAATTACTTTTTCCTCTGAAGT
CTGAGTTCTGGTTGGATGGATTCTTATACGACCTTACTTCTTGGTAACTA
AAAGGTGACTTGAGAGTTTTTCCATTTCAACAAAGAGCATCTGATACATT
TGTTCAAAAAACAGAGAAATATCCAGGACAAGGATAAAGGTGGGTCTTAT
TTCTTTCAATGAATAAGTGGACCAGTTACCATTAAATAATGTCAAGTAAT
ACATTAAGAAACTACTATGTTTATTGTAACAATATACATGTCTGACTTCA
TCAAAGGATCTCTAAGTAATTCAAGTAGCCAGTCGGGTTCCTAGAGAAAC
CTGTTTTTCAATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_o09.g1 MSMg01no503_o09.g1 CHROMAT_FILE:
MSMg01no503_o09.g1 PHD_FILE: MSMg01no503_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:19 2005
         (231 letters)



>mm_chr1_171617323_171617953
          Length = 631

 Score =  431 bits (223), Expect = e-125
 Identities = 229/231 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagagataaaaccagtattcaggtcaagggtctctgcaatggacagcgggttcgtaag 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagagataaaaccagtattcagggcaagggtctctgcaatggacagcgggttcgtaag 260

                                                                       
Query: 61  ttcatttcctgctgtaaagtgaacgttcacgacactgaggaatcctgacaagtgtcctca 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatttcctgctgtaaagtgaatgttcacgacactgaggaatcctgacaagtgtcctca 320

                                                                       
Query: 121 ggtctgaaatatcagtgtttgggcggaccgatctttatctcaaaattttatggagaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtctgaaatatcagtgtttgggcggaccgatctttatctcaaaattttatggagaagag 380

                                                              
Query: 181 gaataagtgactcagagtatctgataataggtaggctgaggggctgagggg 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaataagtgactcagagtatctgataataggtaggctgaggggctgagggg 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)