NAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGCATCTTTATCTAAAGGCTGCTAGCAGAATACTGGCTTTCA
GGCAGCTGGGATGAGGGTCTTAAGGCCCACAACTATCATGACACACCTAC
TCCAACGGGTCCAGGGTATTTCTAATAGTACCACTCCCTGGGCAGAGCAG
ATACAAATCAGCACAGGATGCTAACCTTGCCAAGACGTAGGAATGAAAAT
CTGGTGAGACTGACTTCATCAACCTGGATTAGACTTTGAGGAGTATAATA
TCAGGTGGTTTATTTCCAATATATTTAAGCCCAGTGTAGTTTAAAAAAAA
AAGTTTCCTGGTGTAATACAATCCCAGGTGCACAAAGACATGTAATTACA
TTGAAACTCAAATCAGGTTAGTGTCATCTCTTCCAAGAAGATGAGTTCTA
GAGATAAGCTAACTGTACTAGCTTAAGGGCCTAAGGATCTGGCCTGGTCT
CCATCATACAGATAACATAGTCATTTGGGCTACTATCCACCTCTAGTCCT
GACTGTGAGAGTTTAGGGGAGTCTCTGGCTGTAAGGGTATTTATACTAAG
CCATCTCTGGTCCTGGTTGTAGGACCATGCTATGGCCTGGCCCAACAGAT
AACACAGATCACCNAGCTATTACTCCNATTCCCCAGCTTCTGGATGGAAG
AACAAGTTTTCATCTTTTCCATTGGAAAGATGTGCCAAAAAGCTAGAATG
GAACAGTGTCATTAGG

GCGGGCGACGGGAACGACAGCACAGGGGAAAACGGGAACGAACCCCCCCC
ACCCAAAGAGAAGGGNGGCGGGGGGGGGAAACCCCCCCGCGCACNGNGAC
GCGCGCCCCCCCCCCAAACAGACAGAGNAGTTNTGGNGGGGGGGGAGCGC
GCCGGANNNNNNNNNNNNNGCGCCCAAAAAGAGAACAAAAAAGGGGGGGG
GTAAAGAGGGCCTCCGGGGGANGGGGGGNCCCCGGGCCCCCGGGGGGTTT
TTGTCTTCACAAAAAAACCGAGGGGGGGGAGAGGGGGGGGGGGAAACACC
CCCCCCANNAANANAAAAAAGGGTGTTTCCCCCCCCCCCCGGGGAAAAAA
AAAAAAGCCTCCAAAAAAAACCCCCCCCCCCCCCAAAAGGAGGGGGAGGA
GGGGGTGAAAAAAAAAGGGGGGGGGAGGGGGGGGGGGGGGGGGAAAAAAA
AAAAAAAAAAACCCTGGGGGGGGACAAAAACAAAGAGGGGGGCCCCCACA
CAAGAGTTGTGGGCGCCCCCCCACCCCCCGCCGGGGGGGGGGGGGGGGGG
GNNGCCCCCCCCCCCGCCGAAGAGGACCCCCCCCCCCGCCAAGAGGAGGC
GCTCCGAGGGGGAGGGGGGGGGAGGACCCCCCCCCCCCCCACCCCACGGG
GGGGGGGGGGGGGGGGCCCCCCCCCCCCCACAAAAAATATTTTGACGGCA
GAGAGACACCACACCCCCCCCCCCCCCGGAGGGCGCCGAGAGGGAGAGAA
ANNANAAAAANAAGAATAATTTAAAAAAAAAAACAAGAAAGAGCGACCCG
TCCCCCCCCCGGGCGGGGGGGGGGGGGCCCCGCCCCACACAAAAAACAAA
CAAAAAGAAGGAGAAGGTGGGGGGGCGCGAAAAGAACAAAGAAACGGCGC
GCGGCCCGCGCCTACTCC

Query= MSMg01no504_a15.b1 MSMg01no504_a15.b1 CHROMAT_FILE:
MSMg01no504_a15.b1 PHD_FILE: MSMg01no504_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:30 2005
         (586 letters)



>mm_chr1_193482443_193483428
          Length = 986

 Score = 1104 bits (571), Expect = 0.0
 Identities = 580/583 (99%), Gaps = 1/583 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcatctttatctaaaggctgctagcagaatactggctttcaggcagctgggat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctgcatctttatctaaaggctgctagcagaatactggctttcaggcagctgggat 263

                                                                       
Query: 65  gagggtcttaaggcccacaactatcatgacacacctactccaacgggtccagggtatttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagggtcttaaggcccacaactatcatgacacacctactccaacgggtccagggtatttc 323

                                                                       
Query: 125 taatagtaccactccctgggcagagcagatacaaatcagcacaggatgctaaccttgcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taatagtaccactccctgggcagagcagatacaaatcagcacaggatgctaaccttgcca 383

                                                                       
Query: 185 agacgtaggaatgaaaatctggtgagactgacttcatcaacctggattagactttgagga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 384 agacgtaggaatgaaaatctggtgagactgacttcatcaacctggattagactttaagga 443

                                                                       
Query: 245 gtataatatcaggtggtttatttccaatatatttaagcccagtgtagttt-aaaaaaaaa 303
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 gtataatatcaggtggtttatttccaatatatttaagcccagtgtagttttaaaaaaaaa 503

                                                                       
Query: 304 agtttcctggtgtaatacaatcccaggtgcacaaagacatgtaattacattgaaactcaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agtttcctggtgtaatacaatcccaggtgcacaaagacatgtaattacattgaaactcaa 563

                                                                       
Query: 364 atcaggttagtgtcatctcttccaagaagatgagttctagagataagctaactgtactag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atcaggttagtgtcatctcttccaagaagatgagttctagagataagctaactgtactag 623

                                                                       
Query: 424 cttaagggcctaaggatctggcctggtctccatcatacagataacatagtcatttgggct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttaagggcctaaggatctggcctggtctccatcatacagataacatagtcatttgggct 683

                                                                       
Query: 484 actatccacctctagtcctgactgtgagagtttaggggagtctctggctgtaagggtatt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 684 actatccacctctagtcctgactgtgagagtttaggggagtctctggctataagggtatt 743

                                                      
Query: 544 tatactaagccatctctggtcctggttgtaggaccatgctatg 586
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tatactaagccatctctggtcctggttgtaggaccatgctatg 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)