Query= MSMg01no504_b19.b1 MSMg01no504_b19.b1 CHROMAT_FILE:
MSMg01no504_b19.b1 PHD_FILE: MSMg01no504_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:36 2005
(628 letters)
>mm_chr1_193329042_193330069
Length = 1028
Score = 1017 bits (526), Expect = 0.0
Identities = 601/628 (95%), Gaps = 7/628 (1%)
Strand = Plus / Plus
Query: 5 gaattctttgtttttctctgtacccatttttt-aatagagttatttggttctctggagtc 63
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 gaattctttgtttagctctgtacccatttttttaatagagttatttggttctctggagtc 263
Query: 64 taactttttgagttctttgtatatattggctattagcccctaaagtacttttaaaataat 123
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 264 taacttcttgagttctttgtatatattggctattagcccctaaggtacttttaaaatagt 323
Query: 124 tatgaggctggagagggggctcaggggttaagagtcttactattctacaggacatgtaaa 183
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 tatgaggctggagaggtggctcaggggttaagagccttactattctacaggacatgtaaa 383
Query: 184 ggtttgaataagaatggcctccatagggctggagagatggctcagaggtttaaaaagtat 243
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 ggtttgaataagaatggcctccatagggctggagagatggcgcagaggtttaaaaagtac 443
Query: 244 tgagtggtcttccagaggtcctgaatttcaattcccagcaatcacatggtggctcacaac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgagtggtcttccagaggtcctgaatttcaattcccagcaatcacatggtggctcacaac 503
Query: 304 catctgtaatggaatctgatgccctctgctggtgtgtctgaagacagctacagtgtactc 363
|||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct: 504 catctgtaatgggatctgatgccctctgctggtgtgtctgaagatagctactgtgcgctc 563
Query: 364 gtataaatgaaataaataaataaatctttttttttttt---aaagggtaggggtaggaaa 420
|||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 564 gtataaattaaataaataaataaatctttttttttttttttaaagggtaggggtgggaaa 623
Query: 421 aaggaaaaaaaaaaaaccaacaagctggagagatggctcagaggttaagagcactgg-ct 479
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 624 aaggaaaaaaaaaa--ccaacaagctggagagatggcttagaggttaagagcactgggct 681
Query: 480 gttcttccataggttctgagttcaaattccagcagccacatggtggctcattactatctg 539
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 682 gttcttccataggttctgagttcaaatcccagcagccacatggtggctcattactatcta 741
Query: 540 taatgagatcagtaataatatctataataatattatgacctacaggcatacatgcagcca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 taatgagatcagtaataatatctataataatattatgacctacaggcatacatgcagcca 801
Query: 600 gagtgttgtatacataataaatctttaa 627
|||||||||||| |||||||||||||||
Sbjct: 802 gagtgttgtatatataataaatctttaa 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_b19.g1 MSMg01no504_b19.g1 CHROMAT_FILE:
MSMg01no504_b19.g1 PHD_FILE: MSMg01no504_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:36 2005
(174 letters)
>mm_chr1_193526240_193526813
Length = 574
Score = 319 bits (165), Expect = 5e-92
Identities = 171/173 (98%)
Strand = Plus / Minus
Query: 1 aattacaccctgcagcatttagtattttaacctgaattcattgatttcattagaaaatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aattacaccctgcagcatttagtattttaacctgaattcattgatttcattagaaaatac 284
Query: 61 taaagcaaggccagtgaaatacagaaaggcctggacttagctaggataagttcaggtaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 taaagcaaggccagtgaaatacagaaaggcctggacttagctaggataagttcaggtaac 224
Query: 121 tgggagtcagacacataaaaactgggagggagggagggagggagggagggagg 173
||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 223 tgggagtcagacacataaaaactgggagggaaggagggagggaggaagggagg 171
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space: 93956
Effective search space used: 93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
