Query= MSMg01no504_b21.b1 MSMg01no504_b21.b1 CHROMAT_FILE:
MSMg01no504_b21.b1 PHD_FILE: MSMg01no504_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:37 2005
(650 letters)
>mm_chr1_190559983_190561031
Length = 1049
Score = 1197 bits (619), Expect = 0.0
Identities = 640/647 (98%), Gaps = 1/647 (0%)
Strand = Plus / Plus
Query: 4 gaattcccacctctctcatctcattcctcaccaggtcccttcccatcatcagaacgaacc 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcccacctctctgatctcattcctcaccaggtcccttcccatcatcagaacgaacc 263
Query: 64 acactctggcttagctaggaagttcttcaggaagctgcctgtctactctcttgctggcct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acactctggcttagctaggaagttcttcaggaagctgcctgtctactctcttgctggcct 323
Query: 124 gaatctgagttgaaataagcatactcgtggcagctacttctaggtctgtgcagataaaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaatctgagttgaaataagcatactcgtggcagctacttctaggtctgtgcagataaaaa 383
Query: 184 aacttgagttggggcaatctgagtagaattctgagactaaacgtcaaggacacctttttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacttgagttggggcaatctgagtagaattctgagactaaacgtcaaggacacctttttt 443
Query: 244 ctacactggaacttgaaacagtggccactaattttattcaagtaatggagggactggaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctacactggaacttgaaacagtggccactaattttattcaagtaatggagggactggaga 503
Query: 304 ggaagttcagttgatagtgcttgcctgacatgcaggaatccctggctttaatccaagaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaagttcagttgatagtgcttgcctgacatgcaggaatccctggctttaatccaagaag 563
Query: 364 gaagaataaatgggggtgtccaaggcaggtagagacaagagggtcagaagttcaaggccg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaagaataaatgggggtgtccaaggcaggtagagacaagagggtcagaagttcaaggccg 623
Query: 424 cctttaattatctagtaagtaattgcctaagcctcatcaacagtttggggttaaaggcag 483
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 624 cctttaattatctagtaagtaattgcctaagcctcatcaacagct-ggggttaaaggcag 682
Query: 484 gatgtgtttctttttcttaacattcaaaatatgtggcacaagtctttgtagtgtgagacc 543
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 683 gatgtgtttctttttcttaacattcaaaatacatggcacaagtctttgtagtgtgagacc 742
Query: 544 atttgttttcatcagtccctatttgtaagtccaaaaacgttcagcctacttttcccctaa 603
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 743 atttgttttcatcagtccctatttgtaagtccaaaaatgttcagcctacttttcccctaa 802
Query: 604 agtggggcatctcatcagtctgggagggaactgtaaattagccctca 650
|||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 803 agtggggcatctcatcagtctgggagggaactgtaaataagccctca 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1049
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1039
Effective search space: 664960
Effective search space used: 664960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_b21.g1 MSMg01no504_b21.g1 CHROMAT_FILE:
MSMg01no504_b21.g1 PHD_FILE: MSMg01no504_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:37 2005
(613 letters)
>mm_chr1_190699513_190700525
Length = 1013
Score = 1069 bits (553), Expect = 0.0
Identities = 598/613 (97%)
Strand = Plus / Minus
Query: 1 cattagacctggggagaatatatgactagcgggtgtacttgtggaagccatatgctgaaa 60
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 813 cattagacctggggagaatatatgactagcgggtgtactcatggaagtcatatgctgaaa 754
Query: 61 gaacaaaggcttggtcattgttactggtgcctttgatgaaaatatatttatgacagtgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 753 gaacaaaggcttggtcattgttactggtgcctttgatgaaaatatatttatgacagtatt 694
Query: 121 tcagtattttaaccaaaattactttgcaggtaaaagattagagtacacgttctaagaata 180
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 693 taagtattttaaccaaaattactttgcaggtaaaagattagagtacaagttctaagaata 634
Query: 181 cagattgtaaaaacattttcttgcagatcaaatgatccgctgaaatgatggcttctacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cagattgtaaaaacattttcttgcagatcaaatgatccgctgaaatgatggcttctacat 574
Query: 241 gagacagcggctactaatatttataaagaaggccctggaaatgaaatggggaaatgctga 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 573 gagacagcggctactaatatttataaagaaggacctggaaatgaaatggggaaatgctga 514
Query: 301 tagaaacaggatgtcaaaagggagaacaaaatatccattgtgaaataagatgagggcatc 360
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 513 tagaaacagcatgtcaaaaaggagaacaaaatatccattgtgaaataagatgaggacatc 454
Query: 361 tgtgttgatatcttctctctcgtgctgcttattgtcgggtcgtacgagaaaaagtcaggt 420
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 453 tgccttgatgtcttctctctcgtgctgcttattgtcgggtcgtacgagaaaaagtcagat 394
Query: 421 ggcggtaaatgtgatacttgaccgtccactcacaaaggttctcttggaattacatcacag 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ggcggtaaatgtgatactttaccgtccactcacaaaggttctcttggaattacatcacag 334
Query: 481 cgcactaacctggtgctctttctccatcctgacaaacatgaactccttaactttcatata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cgcactaacctggtgctctttctccatcctgacaaacatgaactccttaactttcatata 274
Query: 541 aattgggcttccataggcttaaagcacaaggcaaatggctttaattttaaaaactattat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aattgggcttccataggcttaaagcacaaggcaaatggctttaattttaaaaactattat 214
Query: 601 ccaatgcaaccta 613
|||||||||||||
Sbjct: 213 ccaatgcaaccta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
