NNNNTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTGTTTGCATTCAAGGCCCATGATACCTGATCAATGT
CAACACTTCTCTCCAGAATGTGATATTGTCTACTGAAAGAGCACCTGCAG
ATGATTTTATCATGTAAAATAAGAATTAAAATATTGTCTGTTAAGGTACA
TCTGAACAATGGAGATATTGTAAATTCCATCATGATGTTTTTATCCCTCT
GAACAAGTGAAAATGGAAGTCAACCCCGTGTTTGTTCCATTGGCTAGCCC
AAACAACTTTTCACAAGTAGAAAGCGTTGCAAGGACTGGTGTTGTGGCTT
GGTAGTAGATGTTTGTATAACATCAGAGAGGCCCAGGGTTCAATCCCAGT
ACAACCAAAGTTAAAAAAATAAAAGATTTTTGATGAACTTGTCTTGGTTG
ATAGGGTGCTGACACAGCACGCAGGAAACTTTTGATATAGCACCACTAAA
ACCGAAGGTGCTGCATGTGCTTGAATAGGGGGATCAGAAGTTCAATGCTC
ATGGATTGGCAGGATCAACATTGTAAAAATGGCCATCTTGCCAAAAGCAA
TCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAAC
GAATTAAAAAGGGCAATCTGCAAATTCATCTGGAATAACNAAAAACCTAG
GATAGCAAAAACTCTTTCTCAGGATAAAGAAACTCTGGTGGAATCAACAT
GGCTGAACTAA

TATGTGGTAGGCTGGCGCCCGCCTTTCCTCACTTTGGTGACACTATGTTG
ATCCGCGGATTCTATTTGGTTATTAATANNTTCAGNNAAAAAAGAGTCTT
ATTTANGATGTTTACCTTCTAAATATCTCAAAAAAGCATGGTCCTNNNNT
TGGGTGGCTGGGTGGGAGGTTGCACTTTGGTGTGGGCTGACTGAATAAGG
CCCAATAATCCCCGTTTTTGAAAAAACCCCGGGACTGGGGAGAATCCACC
CCCCCCCCCTAAAAAAAAGCCCTTTTCCCCATTTTTNNNAAGNNAAGGAA
ACCACACCGGGGGGCCAAAAAAAATTTTTTCTCCCCCCCCGGGGGGGCCC
CTTTTTTTATGAAAAATGTTTTTTAGAGAGGGAGGAGAACACCCCCCTTT
TTCTTTGTGGAGGANAGATAGAAAATNTTATCTCACCCTCTGNTGATGGA
TAATAAAAAGTTNCCATTACTTTTCTCTGTNCTCTTCTGTNTGTGATTTA
GTGGNTNTGTCCTCAGAGGTTATTAATGTTGCGGGGGCGTTTTTTTTTTT
TAAATTTTACCCACTCCCCCTC

Query= MSMg01no504_f08.b1 MSMg01no504_f08.b1 CHROMAT_FILE:
MSMg01no504_f08.b1 PHD_FILE: MSMg01no504_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:55 2005
         (634 letters)



>mm_chr1_80433653_80434686
          Length = 1034

 Score = 1151 bits (595), Expect = 0.0
 Identities = 623/635 (98%), Gaps = 5/635 (0%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcattgtttgcattcaaggcccatgatacctgatcaatgtcaacacttctctccag 64
            |||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1024 gaattcattgattgaattcaaggctcatgatacctgatcaatgtcaacacttctctccag 965

                                                                        
Query: 65   aatgtgatattgtctactgaaagagcacctgcagatgattttatcatgtaaaataagaat 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964  aatgtgatattgtctactgaaagagcacctgcagatgattttatcatgtaaaataagaat 905

                                                                        
Query: 125  taaaatattgtctgttaaggtacatctgaacaatggagatattgtaaattccatcatgat 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  taaaatattgtctgttaaggtacatctgaacaatggagatattgtaaattccatcatgat 845

                                                                        
Query: 185  gtttttatccctctgaacaagtgaaaatggaagtcaaccccgtgtttgttccattggcta 244
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  gtttttatccctctgaccaagtgaaaatggaagtcaaccccgtgtttgttccattggcta 785

                                                                        
Query: 245  gcccaaacaacttttcacaagtagaaagcgttgcaaggactggtgttgtggcttggtagt 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  gcccaaacaacttttcacaagtagaaagcgttgcaaggactggtgttgtggcttggtagt 725

                                                                        
Query: 305  agatgtttgtataacatcagagaggcccagggttcaatcccagtacaaccaaagttaaaa 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724  agatgtttgtataacatcagagaggcccagggttcaatcccagtacaaccaaagttaaaa 665

                                                                        
Query: 365  aaataaaagatttttgatgaacttgtcttggttgatagggtgctgacacagcacgcagga 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 664  aaataaaagatttttgatgaacttgtcttggttgatagggtgctgacacagcacacagga 605

                                                                        
Query: 425  aacttttgatatagcaccactaaaaccgaaggtgctgcatgtgcttgaatagggggatca 484
            ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 604  aacttttgatatagcaccacttaaaccgagggtgctgcatgtgcttgaatagggggatca 545

                                                                        
Query: 485  gaagttca-----atgctcatggattggcaggatcaacattgtaaaaatggccatcttgc 539
            ||||||||     |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544  gaagttcaatgtcatgctcatggattggcaggatcaacattgtaaaaatggccatcttgc 485

                                                                        
Query: 540  caaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacg 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484  caaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacg 425

                                               
Query: 600  aattaaaaagggcaatctgcaaattcatctggaat 634
            |||||||||||||||||||||||||||||||||||
Sbjct: 424  aattaaaaagggcaatctgcaaattcatctggaat 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)