NGGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAATTTCGGAATAGCAAATGGCTGAGAAGCACCTGAAAAA
AAAAAACTGTTTAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAATCA
GGTGACAGCAATGCTGGCAGATGTGGAGAGGAGACCCTTCCCATTGTTGT
AGATTGCAGCCGGCCCAACCCTCCTGACGCTGGCCTAATTGGGCTCCTTG
TTTTTCTTTAAAANNNNNNNAACNAATTTTAATTTTGGGAGGGGGGTTGG
GGATTCCCTGGGGGGGACCCCCCCCAAAACCTTTTTTTTTTTTTTTGGGG
TTTTTTTTCCCCAATTTTTCACACTCCTCCCCCTNNTCAAGAAAAAAAGA
GAAGTTTTTTTTTTTTCTTATAAAAAAAAAAAGAGGGGGNNNNGGNNTTT
TTTTTTTTTTCTCCACTCTCNTTTTTTTTGATAGGTTTGCTTGAGGACCC
ACGCTTCTTCCCTCTCCTCCTGGTTGTTGNNTNCTNCCNTANNNNTTAAT
CTCTCCAACCTTACCCCCGGTTCCCCCCCCCCCCCCCTTTTTCTTTTCTT
GCCGCAGCAGGTACCCGACATATTTGTTTCTTTCTTTTGTTTTGTTTGTT
ATCGTCTCTCTCTTTNCTTTGTTGTCCTTTTTTTTTTTTATTTCTCCCCT
CCTCCTCATTTTTACTCATCCACTTTTTT

NNGGGGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATCTAATAC
CCAGATTTTCCTCTAGAGTTCAGCTTGACCTCATTTATGAACTGCCTGAG
ACCTAACAAATACCACATTAAATTATTTGAGTAACAATGAGTCACCCAGT
ACATGACAAAAATATCTGTATCACATAAAATCAAGAGCAGAGAGAAATCA
AGGAATAGTGCACAATTGCTTGCTTGCTTTTGCTCAACTTCATTTCTTTA
TTCTTACAAAGAATCCCCATATCTAGGGAATATGGACACCCACAGTAGCC
TAGAACTTCTCAAATCAATTAACTCAATTAAGACAATTGCTACAGACACA
CCCACAAGACAACATAATATAGACAAACTCTCATTAAGATTCCCTTGTCA
AAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCT
ATTCCATTGGTCTACTTGTGTGTCCTTATACCAGGACCATGCAGTTTTTA
TCACAATTGCTCTGTAGTACAGCTTTAGTTCAGGCATAGTGATTCCACCA
GAGGTTTTATATCCTGGGGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTA
TTCCAGGTGAATCTGCCGATTGCCCTTTCTAATTCGTTGAAGAATTGTGT
TGGAAATTTTATGGGGATTACATTGAATCAGTAGATTGCTTTTGGN

Query= MSMg01no504_i05.g1 MSMg01no504_i05.g1 CHROMAT_FILE:
MSMg01no504_i05.g1 PHD_FILE: MSMg01no504_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:08 2005
         (597 letters)



>mm_chr1_124617346_124618348
          Length = 1003

 Score =  942 bits (487), Expect = 0.0
 Identities = 574/613 (93%), Gaps = 20/613 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatctaatacccagattttcctctagagttcagcttgacctcatt--------tatga 52
           |||||||||||||||||  ||||||||||||||||||||| ||||||        |||||
Sbjct: 613 tttatctaatacccagacattcctctagagttcagcttgagctcatttataaatatatga 554

                                                                       
Query: 53  actgcctgagacctaacaaatac-----cacattaaattatttgagtaacaatgagtcac 107
           |||||||||||||||||||||||     |||||||||||||||||||||  |||||||||
Sbjct: 553 actgcctgagacctaacaaataccacatcacattaaattatttgagtaatgatgagtcac 494

                                                                       
Query: 108 ccagtacatgacaaaaatatctgtatcacataaaatcaagagcagagagaaatcaaggaa 167
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccagtacctgacaaaaatatctgtatcacataaaatcaagagcagagagaaatcaaggaa 434

                                                                       
Query: 168 tagtgcacaattgcttgcttgcttttgctcaacttcatttctttattcttacaaagaatc 227
           |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||
Sbjct: 433 tagtgcacaattgcttgcttacttttgatcaacttcatttctttattcttacaaaggatc 374

                                                                       
Query: 228 cccatat----ctagggaatatggacacccacagtagcctagaacttctcaaatcaatta 283
           |||||||    |||||||| ||  ||||||||||||||||| ||||||||||||||||||
Sbjct: 373 cccatatctacctagggaa-at--acacccacagtagcctacaacttctcaaatcaatta 317

                                                                       
Query: 284 actcaattaagacaattgctacagacacacccacaagacaacataatatagacaaactct 343
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 316 actcaattaagacaattgctacagacacacccacaagacaacataatatagacatactct 257

                                                                       
Query: 344 cattaagattcccttgtcaaagatcaagtgaccataggtgtgtgggttcatttctgggtc 403
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 256 cattaagattcccttgtcaaagatcaagtgacaataggtgtgtgggttcatttctgggtc 197

                                                                       
Query: 404 ttcaattctattccattggtctacttgtgtgtccttataccaggaccatgcagtttttat 463
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 196 ttcaattctattccattggtctacttgtgtgtccttataccagtaccatgcagtttttat 137

                                                                       
Query: 464 cacaattgctctgtagtacagctttagttcaggcatagtgattccaccagaggttttata 523
            |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 136 gacaattgctctgtagtacagctttagttcaagcatggtgattccaccagaggttttata 77

                                                                       
Query: 524 tcctggggaagagtttttgctatcctaggttttttgttattccaggtgaatctgccgatt 583
           ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 76  tcctgggaaagagtttttgctatcctaggttttttgttattccagatgaatctgctgatt 17

                        
Query: 584 gccctttctaatt 596
           |||||||||||||
Sbjct: 16  gccctttctaatt 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 1003
Length adjustment: 10
Effective length of query: 587
Effective length of database: 993
Effective search space:   582891
Effective search space used:   582891
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)